| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 47-354 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 41-244 | |||||
| Model 2 | Knot | K 31 | 47-354 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 41-244 | |||||
| Model 3 | Knot | K 31 | 47-354 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 41-244 | |||||
| Model 4 | Knot | K 31 | 47-354 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 41-244 | |||||
| Model 5 | Knot | K 31 | 47-354 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 41-244 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3F7U |
A |
S +31 |
29.96% |
58.33% |
12.50% |
1.18 |
..Target: CIYKFGTSPDSKATVSGDHWDHGLNGEN------WEGKDGAGNAWVCKTGRKQSPINVPQYQVLDGKGSKIANGLQTQWSYPDLMSNGTSVQVINNGHTIQVQWTYNYAGHATIAIPAMHNQTNRIVDVLEMRPNDAADRVTAVPTQFHF----HSTSEHLLAGKIYPLELHIVHQVTEKLEACKGGCFSVTGILFQLDNGPD-NELLEPIF---ANMPSREGTFSNLPAGTTIKLGELLPSDRD---YVTYEGSLTTPPCSEGLLWHVMTQPQRISFGQWNRYRLAVGLKECNSTETAADAGHHHHHRRLLHNHAHLEEVPAATSEPKHYFRRVMLAESANPDAYTCKAVAFGQNFRNPQYANGRTIKLARYH |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:47:21 2017 JOB CREATED : 4d5431bb-bef0-4e45-b02e-f707a1c54fc0 Fri Dec 1 23:49:02 2017 STATUS CHANGED : N -> R Fri Dec 1 23:49:02 2017 INFO : JOB STARTED AT: 2017-12-01 23:49:02.026418 Fri Dec 1 23:49:02 2017 INFO : METHOD: 1 Fri Dec 1 23:49:02 2017 INFO : Precalculated profile found... Fri Dec 1 23:49:02 2017 INFO : Homologue pool found... Fri Dec 1 23:49:02 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 00:06:38 2017 INFO : Starting homologue filtering... Sat Dec 2 00:07:30 2017 INFO : Getting structures from PDB... Sat Dec 2 00:07:34 2017 INFO : Creating modelling alignment... Sat Dec 2 00:07:34 2017 INFO : Modelling... Sat Dec 2 00:16:07 2017 INFO : Model 1 built Sat Dec 2 00:16:07 2017 INFO : Validating Calpha distances... Sat Dec 2 00:16:07 2017 INFO : Model 1 distances correct: True Sat Dec 2 00:16:07 2017 INFO : Modelling... Sat Dec 2 00:24:34 2017 INFO : Model 2 built Sat Dec 2 00:24:34 2017 INFO : Validating Calpha distances... Sat Dec 2 00:24:34 2017 INFO : Model 2 distances correct: True Sat Dec 2 00:24:34 2017 INFO : Modelling... Sat Dec 2 00:38:40 2017 INFO : Model 3 built Sat Dec 2 00:38:40 2017 INFO : Validating Calpha distances... Sat Dec 2 00:38:40 2017 INFO : Model 3 distances correct: True Sat Dec 2 00:38:40 2017 INFO : Modelling... Sat Dec 2 00:47:35 2017 INFO : Model 4 built Sat Dec 2 00:47:35 2017 INFO : Validating Calpha distances... Sat Dec 2 00:47:35 2017 INFO : Model 4 distances correct: True Sat Dec 2 00:47:35 2017 INFO : Modelling... Sat Dec 2 01:02:19 2017 INFO : Model 5 built Sat Dec 2 01:02:19 2017 INFO : Validating Calpha distances... Sat Dec 2 01:02:19 2017 INFO : Model 5 distances correct: True Sat Dec 2 01:03:02 2017 INFO : Finished modelling Sat Dec 2 01:03:02 2017 STATUS CHANGED : R -> P Sat Dec 2 01:03:02 2017 INFO : Checking topology... Sat Dec 2 01:04:47 2017 INFO : Knot matrices done... Sat Dec 2 01:06:18 2017 INFO : Some knots found! Sat Dec 2 01:06:53 2017 INFO : Some lassos found! Sat Dec 2 01:06:53 2017 INFO : Finishing... Sat Dec 2 01:06:53 2017 STATUS CHANGED : P -> E Sat Dec 2 01:06:53 2017 ERROR : Error while finishing Sat Dec 2 01:06:53 2017 STATUS CHANGED : E -> F |
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