Job name:

5GM6 chain Q

4e093179-fd4a-40d5-a36b-ec0fc967d3c8
Finished
Models Number of gaps:3 Gap lengths: 76, 24, 12
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap2nd gap3rd gap
Model 1 Unknot -18284
Model 2 Unknot -17948
Model 3 Unknot -17903
Model 4 Unknot -16998
Model 5 Unknot -16589
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
None of the models is perfect? By clicking the button below you can download a .pdb file with the currently shown mix of models - for each gap at most one model can be selected. If none of them is checked, the gap will be left as is. Fourth and further gaps (sorted by size) can only come from one of the models.
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Models
Similarity profile
Modelling alignment

Sun Jul 23 14:56:17 2017	JOB CREATED : 4e093179-fd4a-40d5-a36b-ec0fc967d3c8
Sun Jul 23 17:05:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 17:05:02 2017	INFO : JOB STARTED AT: 2017-07-23 17:05:02.695762
Sun Jul 23 17:05:02 2017	INFO : METHOD: 1
Sun Jul 23 17:05:02 2017	INFO : Precalculated profile found...
Sun Jul 23 17:05:02 2017	INFO : Homologue pool found...
Sun Jul 23 17:05:02 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Sun Jul 23 17:05:02 2017	INFO : Proceeding using de novo modelling
Sun Jul 23 17:05:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 17:05:02 2017	INFO : Getting structures from PDB...
Sun Jul 23 17:05:03 2017	INFO : Creating modelling alignment...
Sun Jul 23 17:05:03 2017	INFO : Modelling...
Sun Jul 23 17:34:19 2017	INFO : Model 1 built
Sun Jul 23 17:34:19 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:34:19 2017	INFO : Model 1 distances correct: True
Sun Jul 23 17:34:19 2017	INFO : Modelling...
Sun Jul 23 17:53:43 2017	INFO : Model 2 built
Sun Jul 23 17:53:43 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:53:43 2017	INFO : Model 2 distances correct: True
Sun Jul 23 17:53:43 2017	INFO : Modelling...
Sun Jul 23 18:19:04 2017	INFO : Model 3 built
Sun Jul 23 18:19:04 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:19:04 2017	INFO : Model 3 distances correct: True
Sun Jul 23 18:19:04 2017	INFO : Modelling...
Sun Jul 23 18:38:04 2017	INFO : Model 4 built
Sun Jul 23 18:38:04 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:38:04 2017	INFO : Model 4 distances correct: True
Sun Jul 23 18:38:04 2017	INFO : Modelling...
Sun Jul 23 18:57:37 2017	INFO : Model 5 built
Sun Jul 23 18:57:37 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:57:37 2017	INFO : Model 5 distances correct: True
Sun Jul 23 18:57:54 2017	INFO : Finished modelling
Sun Jul 23 18:57:54 2017	STATUS CHANGED : R -> P
Sun Jul 23 18:57:54 2017	INFO : Checking topology...
Sun Jul 23 19:03:36 2017	INFO : Knot matrices done...
Sun Jul 23 19:03:36 2017	INFO : No knots found...
Sun Jul 23 19:03:41 2017	INFO : No lassos found...
Sun Jul 23 19:03:41 2017	INFO : Finishing...
Sun Jul 23 19:03:41 2017	INFO : Job done
Sun Jul 23 19:03:41 2017	STATUS CHANGED : P -> F
Sun Jul 23 19:03:41 2017	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling