GapRepairer

Models

Number of gaps:0

Gap lengths:

Model	Entanglement	Average
		DOPE-HR
Model 1	Non-trivial	-12653
Model 2	Non-trivial	-12547
Model 3	Non-trivial	-12659
Model 4	Non-trivial	-12766
Model 5	Non-trivial	-12592
Colour the base model according to the B-factor (lowest to highest)			Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

EntanglementHelpKnotProtLassoProtLinkProt

Model	Type		Knot core	Slipknot	Lasso	Piercing	Show
			range	loop range	loop	position	in JSmol
Model 1	Lasso	L_-1C	--	--	43-105
Model 2	Lasso	L_-1C	--	--	43-105
Model 3	Lasso	L_-1C	--	--	43-105
Model 4	Lasso	L_-1C	--	--	43-105
Model 5	Lasso	L_-1C	--	--	43-105
							None

Topologies marked by an OK sign () are in accordance with the template topology.

Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.

Lasso thumbnails

Lasso help

Model 1

Model 2

Model 3

Model 4

Model 5

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Job Log

Wed Nov 29 11:21:08 2017	JOB CREATED : 5179456d-8307-42c2-b0fe-34ddefc944b2
Wed Nov 29 11:22:01 2017	STATUS CHANGED : N -> R
Wed Nov 29 11:22:01 2017	INFO : JOB STARTED AT: 2017-11-29 11:22:01.852193
Wed Nov 29 11:22:01 2017	INFO : METHOD: 1
Wed Nov 29 11:22:01 2017	INFO : Precalculated profile found...
Wed Nov 29 11:22:01 2017	INFO : Homologue pool found...
Wed Nov 29 11:22:01 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Wed Nov 29 11:22:01 2017	INFO : Proceeding using de novo modelling
Wed Nov 29 11:22:01 2017	INFO : Verifying structure sequences of homologues...
Wed Nov 29 11:22:01 2017	INFO : Getting structures from PDB...
Wed Nov 29 11:22:02 2017	INFO : Creating modelling alignment...
Wed Nov 29 11:22:02 2017	INFO : Modelling...
Wed Nov 29 11:22:17 2017	INFO : Model 1 built
Wed Nov 29 11:22:17 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:22:17 2017	INFO : Model 1 distances correct: True
Wed Nov 29 11:22:17 2017	INFO : Modelling...
Wed Nov 29 11:22:30 2017	INFO : Model 2 built
Wed Nov 29 11:22:30 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:22:30 2017	INFO : Model 2 distances correct: True
Wed Nov 29 11:22:30 2017	INFO : Modelling...
Wed Nov 29 11:22:53 2017	INFO : Model 3 built
Wed Nov 29 11:22:53 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:22:53 2017	INFO : Model 3 distances correct: True
Wed Nov 29 11:22:53 2017	INFO : Modelling...
Wed Nov 29 11:23:06 2017	INFO : Model 4 built
Wed Nov 29 11:23:06 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:23:06 2017	INFO : Model 4 distances correct: True
Wed Nov 29 11:23:06 2017	INFO : Modelling...
Wed Nov 29 11:23:20 2017	INFO : Model 5 built
Wed Nov 29 11:23:20 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:23:20 2017	INFO : Model 5 distances correct: True
Wed Nov 29 11:23:28 2017	INFO : Finished modelling
Wed Nov 29 11:23:28 2017	STATUS CHANGED : R -> P
Wed Nov 29 11:23:28 2017	INFO : Checking topology...
Wed Nov 29 11:23:39 2017	INFO : Knot matrices done...
Wed Nov 29 11:23:39 2017	INFO : No knots found...
Wed Nov 29 11:23:41 2017	INFO : Some lassos found!
Wed Nov 29 11:23:41 2017	INFO : Finishing...
Wed Nov 29 11:23:41 2017	STATUS CHANGED : P -> E
Wed Nov 29 11:23:41 2017	ERROR : Error while finishing
Wed Nov 29 11:23:41 2017	STATUS CHANGED : E -> F

5V51 chain C