| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 5-117 | 117-304 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 5-117 | 117-305 | -- | -- | |||
| Model 3 | Slipknot | S 31 | 7-119 | 119-306 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 5-115 | 115-304 | -- | -- | |||
| Model 5 | Slipknot | S 31 | 5-115 | 115-304 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1KI2 |
B |
S +31 |
99.36% |
125.00% |
125.00% |
0.74 |
..Target: KMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMG-- |
||||
1E2J |
B |
S +31 |
99.36% |
112.50% |
112.50% |
0.57 |
..Target: KMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMG- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:47:54 2017 JOB CREATED : 532b7b26-d733-495c-be1d-cc5abaa5d413 Sat Dec 2 00:13:03 2017 STATUS CHANGED : N -> R Sat Dec 2 00:13:03 2017 INFO : JOB STARTED AT: 2017-12-02 00:13:03.012236 Sat Dec 2 00:13:03 2017 INFO : METHOD: 1 Sat Dec 2 00:13:03 2017 INFO : Precalculated profile found... Sat Dec 2 00:13:03 2017 INFO : Homologue pool found... Sat Dec 2 00:13:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 00:16:18 2017 INFO : Starting homologue filtering... Sat Dec 2 00:17:16 2017 INFO : Getting structures from PDB... Sat Dec 2 00:17:29 2017 INFO : Creating modelling alignment... Sat Dec 2 00:17:29 2017 INFO : Modelling... Sat Dec 2 00:22:51 2017 INFO : Model 1 built Sat Dec 2 00:22:51 2017 INFO : Validating Calpha distances... Sat Dec 2 00:22:51 2017 INFO : Model 1 distances correct: True Sat Dec 2 00:22:51 2017 INFO : Modelling... Sat Dec 2 00:28:21 2017 INFO : Model 2 built Sat Dec 2 00:28:21 2017 INFO : Validating Calpha distances... Sat Dec 2 00:28:21 2017 INFO : Model 2 distances correct: True Sat Dec 2 00:28:21 2017 INFO : Modelling... Sat Dec 2 00:33:40 2017 INFO : Model 3 built Sat Dec 2 00:33:40 2017 INFO : Validating Calpha distances... Sat Dec 2 00:33:40 2017 INFO : Model 3 distances correct: True Sat Dec 2 00:33:40 2017 INFO : Modelling... Sat Dec 2 00:39:09 2017 INFO : Model 4 built Sat Dec 2 00:39:09 2017 INFO : Validating Calpha distances... Sat Dec 2 00:39:09 2017 INFO : Model 4 distances correct: True Sat Dec 2 00:39:09 2017 INFO : Modelling... Sat Dec 2 00:44:26 2017 INFO : Model 5 built Sat Dec 2 00:44:26 2017 INFO : Validating Calpha distances... Sat Dec 2 00:44:26 2017 INFO : Model 5 distances correct: True Sat Dec 2 00:45:05 2017 INFO : Finished modelling Sat Dec 2 00:45:05 2017 STATUS CHANGED : R -> P Sat Dec 2 00:45:05 2017 INFO : Checking topology... Sat Dec 2 00:47:06 2017 INFO : Knot matrices done... Sat Dec 2 00:48:32 2017 INFO : Some knots found! Sat Dec 2 00:48:32 2017 INFO : No lassos found... Sat Dec 2 00:48:32 2017 INFO : Finishing... Sat Dec 2 00:48:32 2017 STATUS CHANGED : P -> E Sat Dec 2 00:48:32 2017 ERROR : Error while finishing Sat Dec 2 00:48:32 2017 STATUS CHANGED : E -> F |
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