| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 39-358 | 358-510 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 38-358 | 358-510 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 39-358 | 358-510 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 38-358 | 358-510 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 39-358 | 358-510 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:48:08 2017 JOB CREATED : 57112a27-3106-40b2-9aa8-59c9ce7b0388 Sat Dec 2 00:52:03 2017 STATUS CHANGED : N -> R Sat Dec 2 00:52:03 2017 INFO : JOB STARTED AT: 2017-12-02 00:52:03.048634 Sat Dec 2 00:52:03 2017 INFO : METHOD: 1 Sat Dec 2 00:52:03 2017 INFO : Precalculated profile found... Sat Dec 2 00:52:03 2017 INFO : Homologue pool found... Sat Dec 2 00:52:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 00:54:33 2017 INFO : Starting homologue filtering... Sat Dec 2 00:55:45 2017 INFO : Getting structures from PDB... Sat Dec 2 00:55:46 2017 INFO : Creating modelling alignment... Sat Dec 2 00:55:46 2017 INFO : Modelling... Sat Dec 2 00:56:42 2017 INFO : Model 1 built Sat Dec 2 00:56:42 2017 INFO : Validating Calpha distances... Sat Dec 2 00:56:42 2017 INFO : Model 1 distances correct: True Sat Dec 2 00:56:42 2017 INFO : Modelling... Sat Dec 2 00:57:37 2017 INFO : Model 2 built Sat Dec 2 00:57:37 2017 INFO : Validating Calpha distances... Sat Dec 2 00:57:37 2017 INFO : Model 2 distances correct: True Sat Dec 2 00:57:37 2017 INFO : Modelling... Sat Dec 2 00:58:33 2017 INFO : Model 3 built Sat Dec 2 00:58:33 2017 INFO : Validating Calpha distances... Sat Dec 2 00:58:33 2017 INFO : Model 3 distances correct: True Sat Dec 2 00:58:33 2017 INFO : Modelling... Sat Dec 2 00:59:32 2017 INFO : Model 4 built Sat Dec 2 00:59:32 2017 INFO : Validating Calpha distances... Sat Dec 2 00:59:32 2017 INFO : Model 4 distances correct: True Sat Dec 2 00:59:32 2017 INFO : Modelling... Sat Dec 2 01:00:31 2017 INFO : Model 5 built Sat Dec 2 01:00:31 2017 INFO : Validating Calpha distances... Sat Dec 2 01:00:31 2017 INFO : Model 5 distances correct: True Sat Dec 2 01:01:45 2017 INFO : Finished modelling Sat Dec 2 01:01:45 2017 STATUS CHANGED : R -> P Sat Dec 2 01:01:45 2017 INFO : Checking topology... Sat Dec 2 01:47:23 2017 INFO : Knot matrices done... Sat Dec 2 01:50:00 2017 INFO : Some knots found! Sat Dec 2 01:50:00 2017 INFO : No lassos found... Sat Dec 2 01:50:00 2017 INFO : Finishing... Sat Dec 2 01:50:00 2017 STATUS CHANGED : P -> E Sat Dec 2 01:50:00 2017 ERROR : Error while finishing Sat Dec 2 01:50:00 2017 STATUS CHANGED : E -> F |
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