| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 178-226 | -- | -- | -- | |||
| Lasso | L +1N | -- | -- | 96-239 | +44 | ||||
| Model 2 | Knot | K 31 | 178-226 | -- | -- | -- | |||
| Lasso | L +1N | -- | -- | 96-239 | +44 | ||||
| Model 3 | Knot | K 31 | 178-226 | -- | -- | -- | |||
| Lasso | L +1N | -- | -- | 96-239 | +44 | ||||
| Model 4 | Knot | K 31 | 178-226 | -- | -- | -- | |||
| Lasso | L +1N | -- | -- | 96-239 | +44 | ||||
| Model 5 | Knot | K 31 | 178-226 | -- | -- | -- | |||
| Lasso | L +1N | -- | -- | 96-239 | +44 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3BBD |
A |
K +31 |
28.43% |
77.78% |
11.11% |
0.93 |
..Target: GMVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLE------THKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESI----CVFVGAMARGKDNFADEYV---DEKVGLSNYPLSASVACSKFCHGAEDAWNI-L |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Oct 11 12:54:38 2019 JOB CREATED : 58a3dd1f-dd38-4091-964d-ffbbef476d2f Fri Oct 11 12:55:02 2019 STATUS CHANGED : N -> R Fri Oct 11 12:55:02 2019 INFO : JOB STARTED AT: 2019-10-11 12:55:02.208205 Fri Oct 11 12:55:02 2019 INFO : METHOD: 1 Fri Oct 11 12:55:02 2019 INFO : Precalculated profile found... Fri Oct 11 12:55:02 2019 INFO : Homologue pool found... Fri Oct 11 12:55:02 2019 INFO : Verifying structure sequences of homologues... Fri Oct 11 12:55:20 2019 INFO : Starting homologue filtering... Fri Oct 11 12:55:30 2019 INFO : Getting structures from PDB... Fri Oct 11 12:55:32 2019 INFO : Creating modelling alignment... Fri Oct 11 12:55:32 2019 INFO : Adding other chains Fri Oct 11 12:55:32 2019 INFO : Modelling... Fri Oct 11 12:58:38 2019 INFO : Model 1 built Fri Oct 11 12:58:38 2019 INFO : Validating Calpha distances... Fri Oct 11 12:58:38 2019 INFO : Model 1 distances correct: True Fri Oct 11 12:58:38 2019 INFO : Modelling... Fri Oct 11 13:01:41 2019 INFO : Model 2 built Fri Oct 11 13:01:41 2019 INFO : Validating Calpha distances... Fri Oct 11 13:01:41 2019 INFO : Model 2 distances correct: True Fri Oct 11 13:01:41 2019 INFO : Modelling... Fri Oct 11 13:04:39 2019 INFO : Model 3 built Fri Oct 11 13:04:39 2019 INFO : Validating Calpha distances... Fri Oct 11 13:04:39 2019 INFO : Model 3 distances correct: True Fri Oct 11 13:04:39 2019 INFO : Modelling... Fri Oct 11 13:07:41 2019 INFO : Model 4 built Fri Oct 11 13:07:41 2019 INFO : Validating Calpha distances... Fri Oct 11 13:07:41 2019 INFO : Model 4 distances correct: True Fri Oct 11 13:07:41 2019 INFO : Modelling... Fri Oct 11 13:10:51 2019 INFO : Model 5 built Fri Oct 11 13:10:51 2019 INFO : Validating Calpha distances... Fri Oct 11 13:10:51 2019 INFO : Model 5 distances correct: True Fri Oct 11 13:11:21 2019 INFO : Finished modelling Fri Oct 11 13:11:21 2019 STATUS CHANGED : R -> P Fri Oct 11 13:11:37 2019 INFO : Finished edm surfaces: success Fri Oct 11 13:11:37 2019 INFO : Checking topology... Fri Oct 11 13:12:46 2019 INFO : Knot matrices done... Fri Oct 11 13:13:35 2019 INFO : Some knots found! Fri Oct 11 13:13:42 2019 INFO : Some lassos found! Fri Oct 11 13:13:42 2019 INFO : Finishing... Fri Oct 11 13:13:43 2019 INFO : Job done Fri Oct 11 13:13:43 2019 STATUS CHANGED : P -> F Fri Oct 11 13:13:43 2019 STATUS CHANGED : F -> F |
GapRepairer