Table below gives location of the outmost nontriviality found in each model (independent for knot/slipknot and lasso), if any. For knots the location is specified as the largest unknotted segment within the knot, for slipknots additionally the position along the sequence of the threaded loop. For lassos the position of the cystein bridge forming the largest loop is given, along with crossings (if any) - that is, the indexes of the residues of the threaded chain that are closest to the loop surface.

Radio button on the right hand side highlights the corresponding topology thumbnail in the panel below and visualizes the selected topology in the JSmol display (upper left of the screen).

Below are pairwise alignments between target sequence and sequences of the templates selected for modelling. Residues in gaps (that is those for which no ATOM record was present in the .pdb file) are highlighted in gray. Three largest gaps are additionally underlined in red. Amino acids are coloured according to the scheme used by I-Tasser.

For each gap the modelling alignment is shown. These are the actual multiple sequence alignments used by Modeller. Amino acids are coloured according to the scheme used by I-Tasser.