Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
---|---|---|---|---|---|---|---|---|---|
range | loop range | loop | position | in JSmol | |||||
Model 1 | Slipknot | S 4131 | 38-260 | 260-293 | -- | -- | |||
Model 2 | Slipknot | S 4131 | 38-260 | 260-293 | -- | -- | |||
Model 3 | Slipknot | S 4131 | 38-260 | 260-293 | -- | -- | |||
Model 4 | Slipknot | S 4131 | 38-260 | 260-293 | -- | -- | |||
Model 5 | Slipknot | S 4131 | 38-260 | 260-293 | -- | -- | |||
None |
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
3GJC |
A |
S +31,41,+31 |
99.00% |
100.00% |
100.00% |
0.60 |
..Target: --REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNH |
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:48:48 2017 JOB CREATED : 5f9b6079-2093-47a6-a763-292acc4e2a3b Sat Dec 2 01:58:02 2017 STATUS CHANGED : N -> R Sat Dec 2 01:58:02 2017 INFO : JOB STARTED AT: 2017-12-02 01:58:02.250520 Sat Dec 2 01:58:02 2017 INFO : METHOD: 1 Sat Dec 2 01:58:02 2017 INFO : Precalculated profile found... Sat Dec 2 01:58:02 2017 INFO : Homologue pool found... Sat Dec 2 01:58:02 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 02:01:04 2017 INFO : Starting homologue filtering... Sat Dec 2 02:02:19 2017 INFO : Getting structures from PDB... Sat Dec 2 02:02:34 2017 INFO : Creating modelling alignment... Sat Dec 2 02:02:34 2017 INFO : Modelling... Sat Dec 2 02:06:12 2017 INFO : Model 1 built Sat Dec 2 02:06:12 2017 INFO : Validating Calpha distances... Sat Dec 2 02:06:12 2017 INFO : Model 1 distances correct: True Sat Dec 2 02:06:12 2017 INFO : Modelling... Sat Dec 2 02:09:57 2017 INFO : Model 2 built Sat Dec 2 02:09:57 2017 INFO : Validating Calpha distances... Sat Dec 2 02:09:57 2017 INFO : Model 2 distances correct: True Sat Dec 2 02:09:57 2017 INFO : Modelling... Sat Dec 2 02:13:34 2017 INFO : Model 3 built Sat Dec 2 02:13:34 2017 INFO : Validating Calpha distances... Sat Dec 2 02:13:34 2017 INFO : Model 3 distances correct: True Sat Dec 2 02:13:34 2017 INFO : Modelling... Sat Dec 2 02:17:05 2017 INFO : Model 4 built Sat Dec 2 02:17:05 2017 INFO : Validating Calpha distances... Sat Dec 2 02:17:05 2017 INFO : Model 4 distances correct: True Sat Dec 2 02:17:05 2017 INFO : Modelling... Sat Dec 2 02:20:37 2017 INFO : Model 5 built Sat Dec 2 02:20:37 2017 INFO : Validating Calpha distances... Sat Dec 2 02:20:37 2017 INFO : Model 5 distances correct: True Sat Dec 2 02:21:45 2017 INFO : Finished modelling Sat Dec 2 02:21:45 2017 STATUS CHANGED : R -> P Sat Dec 2 02:21:45 2017 INFO : Checking topology... Sat Dec 2 03:06:10 2017 INFO : Knot matrices done... Sat Dec 2 03:09:10 2017 INFO : Some knots found! Sat Dec 2 03:09:10 2017 INFO : No lassos found... Sat Dec 2 03:09:10 2017 INFO : Finishing... Sat Dec 2 03:09:10 2017 STATUS CHANGED : P -> E Sat Dec 2 03:09:10 2017 ERROR : Error while finishing Sat Dec 2 03:09:10 2017 STATUS CHANGED : E -> F |