| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1E79 |
G |
Unknot |
100.00% |
181.49% |
181.49% |
0.72 |
..Target: ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL |
||||
2V7Q |
G |
Unknot |
100.00% |
181.49% |
181.49% |
0.92 |
..Target: ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | QMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANI |
|||
|---|---|---|---|---|---|---|---|---|---|
| 1E79 | G | Unknot | 96.64% | 96.64% | QMKSEAANL----KEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANI |
||||
| 2V7Q | G | Unknot | 96.64% | 96.64% | QMKSEAANL----KEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANI |
||||
Sun Jul 23 14:55:05 2017 JOB CREATED : 6071226d-b97f-4274-8efe-c1d897154ea8 Sun Jul 23 14:56:02 2017 STATUS CHANGED : N -> R Sun Jul 23 14:56:02 2017 INFO : JOB STARTED AT: 2017-07-23 14:56:02.111519 Sun Jul 23 14:56:02 2017 INFO : METHOD: 1 Sun Jul 23 14:56:02 2017 INFO : Precalculated profile found... Sun Jul 23 14:56:02 2017 INFO : Homologue pool found... Sun Jul 23 14:56:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 14:58:57 2017 INFO : Starting homologue filtering... Sun Jul 23 14:59:50 2017 INFO : Getting structures from PDB... Sun Jul 23 14:59:55 2017 INFO : Creating modelling alignment... Sun Jul 23 14:59:55 2017 INFO : Modelling... Sun Jul 23 15:10:36 2017 INFO : Model 1 built Sun Jul 23 15:10:36 2017 INFO : Validating Calpha distances... Sun Jul 23 15:10:36 2017 INFO : Model 1 distances correct: True Sun Jul 23 15:10:36 2017 INFO : Modelling... Sun Jul 23 15:44:37 2017 INFO : Model 2 built Sun Jul 23 15:44:37 2017 INFO : Validating Calpha distances... Sun Jul 23 15:44:37 2017 INFO : Model 2 distances correct: True Sun Jul 23 15:44:37 2017 INFO : Modelling... Sun Jul 23 16:12:42 2017 INFO : Model 3 built Sun Jul 23 16:12:42 2017 INFO : Validating Calpha distances... Sun Jul 23 16:12:42 2017 INFO : Model 3 distances correct: True Sun Jul 23 16:12:42 2017 INFO : Modelling... Sun Jul 23 16:32:27 2017 INFO : Model 4 built Sun Jul 23 16:32:27 2017 INFO : Validating Calpha distances... Sun Jul 23 16:32:27 2017 INFO : Model 4 distances correct: True Sun Jul 23 16:32:27 2017 INFO : Modelling... Sun Jul 23 17:00:26 2017 INFO : Model 5 built Sun Jul 23 17:00:26 2017 INFO : Validating Calpha distances... Sun Jul 23 17:00:26 2017 INFO : Model 5 distances correct: True Sun Jul 23 17:00:49 2017 INFO : Finished modelling Sun Jul 23 17:00:49 2017 STATUS CHANGED : R -> P Sun Jul 23 17:00:49 2017 INFO : Checking topology... Sun Jul 23 17:04:41 2017 INFO : Knot matrices done... Sun Jul 23 17:04:41 2017 INFO : No knots found... Sun Jul 23 17:04:41 2017 INFO : No lassos found... Sun Jul 23 17:04:41 2017 INFO : Finishing... Sun Jul 23 17:04:41 2017 INFO : Job done Sun Jul 23 17:04:41 2017 STATUS CHANGED : P -> F Sun Jul 23 17:04:41 2017 STATUS CHANGED : F -> F |
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