| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 83-175 | 175-376 | -- | -- | |||
| Lasso | L -1C | -- | -- | 305-354 | |||||
| Model 2 | Slipknot | S 31 | 82-192 | 192-376 | -- | -- | |||
| Lasso | L -1C | -- | -- | 305-354 | |||||
| Model 3 | Slipknot | S 31 | 81-197 | 197-376 | -- | -- | |||
| Lasso | L -1C | -- | -- | 305-354 | |||||
| Model 4 | Slipknot | S 31 | 82-175 | 175-376 | -- | -- | |||
| Lasso | L -1C | -- | -- | 305-354 | |||||
| Model 5 | Slipknot | S 31 | 112-176 | 176-376 | -- | -- | |||
| Lasso | L -1C | -- | -- | 305-354 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4TPL |
B |
Unknot |
99.43% |
108.70% |
108.70% |
0.52 |
..Target: XXXXXXHHSSGVDLGTENLYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKSILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA |
||||
5GS6 |
B |
Unknot |
54.73% |
126.67% |
56.81% |
0.87 |
..Target: XXXXXXHHSSGVDLGTENLYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKSILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:52:56 2017 JOB CREATED : 6494a906-e54e-47e3-9d87-ee87b6344a9b Sat Dec 2 06:37:02 2017 STATUS CHANGED : N -> R Sat Dec 2 06:37:02 2017 INFO : JOB STARTED AT: 2017-12-02 06:37:02.436728 Sat Dec 2 06:37:02 2017 INFO : METHOD: 1 Sat Dec 2 06:37:02 2017 INFO : Building Profile... Sat Dec 2 06:37:02 2017 INFO : --E-value set to 0.001-- Sat Dec 2 06:54:00 2017 INFO : Homologue pool found... Sat Dec 2 06:54:00 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 06:55:17 2017 INFO : Starting homologue filtering... Sat Dec 2 06:56:02 2017 INFO : Getting structures from PDB... Sat Dec 2 06:56:12 2017 INFO : Creating modelling alignment... Sat Dec 2 06:56:13 2017 INFO : Modelling... Sat Dec 2 07:15:30 2017 INFO : Model 1 built Sat Dec 2 07:15:30 2017 INFO : Validating Calpha distances... Sat Dec 2 07:15:30 2017 INFO : Model 1 distances correct: True Sat Dec 2 07:15:30 2017 INFO : Modelling... Sat Dec 2 07:33:11 2017 INFO : Model 2 built Sat Dec 2 07:33:11 2017 INFO : Validating Calpha distances... Sat Dec 2 07:33:11 2017 INFO : Model 2 distances correct: True Sat Dec 2 07:33:11 2017 INFO : Modelling... Sat Dec 2 07:48:29 2017 INFO : Model 3 built Sat Dec 2 07:48:29 2017 INFO : Validating Calpha distances... Sat Dec 2 07:48:29 2017 INFO : Model 3 distances correct: True Sat Dec 2 07:48:29 2017 INFO : Modelling... Sat Dec 2 07:57:54 2017 INFO : Model 4 built Sat Dec 2 07:57:54 2017 INFO : Validating Calpha distances... Sat Dec 2 07:57:54 2017 INFO : Model 4 distances correct: True Sat Dec 2 07:57:54 2017 INFO : Modelling... Sat Dec 2 08:10:14 2017 INFO : Model 5 built Sat Dec 2 08:10:14 2017 INFO : Validating Calpha distances... Sat Dec 2 08:10:14 2017 INFO : Model 5 distances correct: True Sat Dec 2 08:10:42 2017 INFO : Finished modelling Sat Dec 2 08:10:42 2017 STATUS CHANGED : R -> P Sat Dec 2 08:10:42 2017 INFO : Checking topology... Sat Dec 2 08:12:11 2017 INFO : Knot matrices done... Sat Dec 2 08:13:11 2017 INFO : Some knots found! Sat Dec 2 08:13:14 2017 INFO : Some lassos found! Sat Dec 2 08:13:14 2017 INFO : Finishing... Sat Dec 2 08:13:14 2017 STATUS CHANGED : P -> E Sat Dec 2 08:13:14 2017 ERROR : Error while finishing Sat Dec 2 08:13:14 2017 STATUS CHANGED : E -> F |
GapRepairer