| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 87-177 | 177-182 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1DUJ |
A |
Unknot |
45.99% |
90.00% |
20.00% |
1.58 |
..Target: -----KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYRV |
||||
2VFX |
A |
Unknot |
43.35% |
90.00% |
10.00% |
0.95 |
..Target: --------------KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYR----V |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 |
Fri Dec 1 09:37:34 2017 JOB CREATED : 6fe9edbe-8b7c-4812-ab8b-aab4b5092625 Fri Dec 1 12:22:02 2017 STATUS CHANGED : N -> R Fri Dec 1 12:22:02 2017 INFO : JOB STARTED AT: 2017-12-01 12:22:02.386157 Fri Dec 1 12:22:02 2017 INFO : METHOD: 1 Fri Dec 1 12:22:02 2017 INFO : Precalculated profile found... Fri Dec 1 12:22:02 2017 INFO : Homologue pool found... Fri Dec 1 12:22:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 12:24:08 2017 INFO : Starting homologue filtering... Fri Dec 1 12:24:49 2017 INFO : Getting structures from PDB... Fri Dec 1 12:24:55 2017 INFO : Creating modelling alignment... Fri Dec 1 12:24:55 2017 INFO : Modelling... Fri Dec 1 12:27:02 2017 INFO : Model 1 built Fri Dec 1 12:27:02 2017 INFO : Validating Calpha distances... Fri Dec 1 12:27:02 2017 INFO : Model 1 distances correct: True Fri Dec 1 12:27:02 2017 INFO : Modelling... Fri Dec 1 12:29:08 2017 INFO : Model 2 built Fri Dec 1 12:29:08 2017 INFO : Validating Calpha distances... Fri Dec 1 12:29:08 2017 INFO : Model 2 distances correct: True Fri Dec 1 12:29:08 2017 INFO : Modelling... Fri Dec 1 12:31:18 2017 INFO : Model 3 built Fri Dec 1 12:31:18 2017 INFO : Validating Calpha distances... Fri Dec 1 12:31:18 2017 INFO : Model 3 distances correct: True Fri Dec 1 12:31:18 2017 INFO : Modelling... Fri Dec 1 12:34:16 2017 INFO : Model 4 built Fri Dec 1 12:34:16 2017 INFO : Validating Calpha distances... Fri Dec 1 12:34:16 2017 INFO : Model 4 distances correct: True Fri Dec 1 12:34:16 2017 INFO : Modelling... Fri Dec 1 12:36:30 2017 INFO : Model 5 built Fri Dec 1 12:36:30 2017 INFO : Validating Calpha distances... Fri Dec 1 12:36:30 2017 INFO : Model 5 distances correct: True Fri Dec 1 12:36:51 2017 INFO : Finished modelling Fri Dec 1 12:36:51 2017 STATUS CHANGED : R -> P Fri Dec 1 12:36:51 2017 INFO : Checking topology... Fri Dec 1 12:37:17 2017 INFO : Knot matrices done... Fri Dec 1 12:37:59 2017 INFO : Some knots found! Fri Dec 1 12:38:00 2017 INFO : No lassos found... Fri Dec 1 12:38:00 2017 INFO : Finishing... Fri Dec 1 12:38:00 2017 STATUS CHANGED : P -> E Fri Dec 1 12:38:00 2017 ERROR : Error while finishing Fri Dec 1 12:38:00 2017 STATUS CHANGED : E -> F |
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