| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K -52-31 | 4-220 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-94 | |||||
| Model 2 | Knot | K -52-31 | 4-220 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-94 | |||||
| Model 3 | Knot | K -52-31 | 4-220 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-94 | |||||
| Model 4 | Knot | K 52-31 | 2-220 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-94 | |||||
| Model 5 | Knot | K -52-31 | 4-220 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-94 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4I6N |
A |
K -52,-31,-31 |
94.06% |
137.50% |
130.83% |
0.57 |
..Target: -------GNWCLIESDPGIFTEMIHGFGCTGLQVEELVVLDESIEHLKPIHGFIFLFRWLKKEMRKEVDDSPQTCTDVYFSQQVIQNACASQALINLLLNCDHPDVDLGPTLKEFKDFTYDLDSASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLRAAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAVISDQKLKYEREMEKFAQAGDSAEVDRLVALIAAEDAKRERYA |
||||
3RIS |
B |
K -52,-31,-31 |
52.86% |
162.50% |
50.42% |
1.07 |
..Target: GNWCLIESDPGIFTEMIHGFGCTGLQVEELVVLD-ESIEHLKPIHGFIFLFRWLKKEMRKEVDDSPQTCTDVYFSQQVIQNACASQALINLLLNCDHPDVDLGPTLKEFKDFTYDLDSASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLRAAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAVISDQKLKYEREMEKFAQAGDSAEVDRLVALIAAEDAKRERYA |
||||
3RIS |
A |
K -52,-31,-31 |
52.42% |
162.50% |
44.17% |
1.06 |
..Target: GNWCLIESDPGIFTEMIHGFGCTGLQVEELVVLD-ESIEHLKPIHGFIFLFRWLKKEMRKEVDDSPQTCTDVYFSQQVIQNACASQALINLLLNCDHPDVDLGPTLKEFKDFTYDLDSASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLRAAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLMAVISDQKLKYEREMEKFAQAGDSAEVDRLVALIAAEDAKRERYA |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Jul 20 21:47:45 2017 JOB CREATED : 76023707-6951-4459-b356-6ff1f44fc126 Thu Jul 20 21:48:01 2017 STATUS CHANGED : N -> R Thu Jul 20 21:48:01 2017 INFO : JOB STARTED AT: 2017-07-20 21:48:01.979350 Thu Jul 20 21:48:01 2017 INFO : METHOD: 1 Thu Jul 20 21:48:02 2017 INFO : Precalculated profile found... Thu Jul 20 21:48:02 2017 INFO : Homologue pool found... Thu Jul 20 21:48:02 2017 INFO : Verifying structure sequences of homologues... Thu Jul 20 21:48:45 2017 INFO : Starting homologue filtering... Thu Jul 20 21:49:16 2017 INFO : Getting structures from PDB... Thu Jul 20 21:49:22 2017 INFO : Creating modelling alignment... Thu Jul 20 21:49:22 2017 INFO : Modelling... Thu Jul 20 21:49:24 2017 STATUS CHANGED : R -> E Thu Jul 20 21:49:24 2017 ERROR : Error while modelling Fri Jul 21 07:56:01 2017 STATUS CHANGED : N -> R Fri Jul 21 07:56:01 2017 INFO : JOB STARTED AT: 2017-07-21 07:56:01.997611 Fri Jul 21 07:56:01 2017 INFO : METHOD: 1 Fri Jul 21 07:56:02 2017 INFO : Precalculated profile found... Fri Jul 21 07:56:02 2017 INFO : Homologue pool found... Fri Jul 21 07:56:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 07:56:49 2017 INFO : Starting homologue filtering... Fri Jul 21 07:57:19 2017 INFO : Getting structures from PDB... Fri Jul 21 07:57:24 2017 INFO : Creating modelling alignment... Fri Jul 21 07:57:24 2017 INFO : Modelling... Fri Jul 21 07:57:26 2017 STATUS CHANGED : R -> E Fri Jul 21 07:57:26 2017 ERROR : Error while modelling Fri Jul 21 08:27:02 2017 STATUS CHANGED : N -> R Fri Jul 21 08:27:02 2017 INFO : JOB STARTED AT: 2017-07-21 08:27:02.302983 Fri Jul 21 08:27:02 2017 INFO : METHOD: 1 Fri Jul 21 08:27:02 2017 INFO : Precalculated profile found... Fri Jul 21 08:27:02 2017 INFO : Homologue pool found... Fri Jul 21 08:27:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 08:27:45 2017 INFO : Starting homologue filtering... Fri Jul 21 08:28:15 2017 INFO : Getting structures from PDB... Fri Jul 21 08:28:21 2017 INFO : Creating modelling alignment... Fri Jul 21 08:28:21 2017 INFO : Modelling... Fri Jul 21 08:31:16 2017 INFO : Model 1 built Fri Jul 21 08:31:16 2017 INFO : Validating Calpha distances... Fri Jul 21 08:31:16 2017 INFO : Model 1 distances correct: True Fri Jul 21 08:31:16 2017 INFO : Modelling... Fri Jul 21 08:34:13 2017 INFO : Model 2 built Fri Jul 21 08:34:13 2017 INFO : Validating Calpha distances... Fri Jul 21 08:34:13 2017 INFO : Model 2 distances correct: True Fri Jul 21 08:34:13 2017 INFO : Modelling... Fri Jul 21 08:37:00 2017 INFO : Model 3 built Fri Jul 21 08:37:00 2017 INFO : Validating Calpha distances... Fri Jul 21 08:37:00 2017 INFO : Model 3 distances correct: True Fri Jul 21 08:37:00 2017 INFO : Modelling... Fri Jul 21 08:39:53 2017 INFO : Model 4 built Fri Jul 21 08:39:53 2017 INFO : Validating Calpha distances... Fri Jul 21 08:39:53 2017 INFO : Model 4 distances correct: True Fri Jul 21 08:39:53 2017 INFO : Modelling... Fri Jul 21 08:42:50 2017 INFO : Model 5 built Fri Jul 21 08:42:50 2017 INFO : Validating Calpha distances... Fri Jul 21 08:42:50 2017 INFO : Model 5 distances correct: True Fri Jul 21 08:43:05 2017 INFO : Finished modelling Fri Jul 21 08:43:05 2017 STATUS CHANGED : R -> P Fri Jul 21 08:43:05 2017 INFO : Checking topology... Fri Jul 21 08:50:04 2017 INFO : Knot matrices done... Fri Jul 21 08:51:34 2017 INFO : Some knots found! Fri Jul 21 08:51:36 2017 INFO : Some lassos found! Fri Jul 21 08:51:36 2017 INFO : Finishing... Fri Jul 21 08:51:37 2017 INFO : Job done Fri Jul 21 08:51:37 2017 STATUS CHANGED : P -> F Fri Jul 21 08:51:37 2017 STATUS CHANGED : F -> F |
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