| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | LL +5,+2 | -- | -- | 312-537 | +87,-111,+196,-227,+259 | |||
| Model 2 | Lasso | LL +5,+2 | -- | -- | 312-537 | +87,-111,+196,-227,+258 | |||
| Model 3 | Lasso | LL +5,+2 | -- | -- | 312-537 | +87,-112,+196,-227,+258 | |||
| Model 4 | Lasso | LL +5,+2 | -- | -- | 312-537 | +87,-111,+197,-227,+258 | |||
| Model 5 | Lasso | LL +5,+2 | -- | -- | 312-537 | +87,-112,+196,-227,+258 | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2FY3 |
A |
Unknot |
99.16% |
200.00% |
200.00% |
0.48 |
..Target: ---SGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSLL-- |
||||
Sun Jul 23 14:54:50 2017 JOB CREATED : 79073df9-a2b5-42aa-89e7-1cc0846ca351 Sun Jul 23 14:55:02 2017 STATUS CHANGED : N -> R Sun Jul 23 14:55:02 2017 INFO : JOB STARTED AT: 2017-07-23 14:55:02.229939 Sun Jul 23 14:55:02 2017 INFO : METHOD: 1 Sun Jul 23 14:55:02 2017 INFO : Precalculated profile found... Sun Jul 23 14:55:02 2017 INFO : Homologue pool found... Sun Jul 23 14:55:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 14:56:07 2017 INFO : Starting homologue filtering... Sun Jul 23 14:57:43 2017 INFO : Getting structures from PDB... Sun Jul 23 14:57:55 2017 INFO : Creating modelling alignment... Sun Jul 23 14:57:55 2017 INFO : Modelling... Sun Jul 23 15:05:15 2017 INFO : Model 1 built Sun Jul 23 15:05:15 2017 INFO : Validating Calpha distances... Sun Jul 23 15:05:15 2017 INFO : Model 1 distances correct: True Sun Jul 23 15:05:15 2017 INFO : Modelling... Sun Jul 23 15:12:53 2017 INFO : Model 2 built Sun Jul 23 15:12:53 2017 INFO : Validating Calpha distances... Sun Jul 23 15:12:53 2017 INFO : Model 2 distances correct: True Sun Jul 23 15:12:53 2017 INFO : Modelling... Sun Jul 23 15:20:56 2017 INFO : Model 3 built Sun Jul 23 15:20:56 2017 INFO : Validating Calpha distances... Sun Jul 23 15:20:56 2017 INFO : Model 3 distances correct: True Sun Jul 23 15:20:56 2017 INFO : Modelling... Sun Jul 23 15:29:06 2017 INFO : Model 4 built Sun Jul 23 15:29:06 2017 INFO : Validating Calpha distances... Sun Jul 23 15:29:06 2017 INFO : Model 4 distances correct: True Sun Jul 23 15:29:06 2017 INFO : Modelling... Sun Jul 23 15:36:57 2017 INFO : Model 5 built Sun Jul 23 15:36:57 2017 INFO : Validating Calpha distances... Sun Jul 23 15:36:57 2017 INFO : Model 5 distances correct: True Sun Jul 23 15:38:07 2017 INFO : Finished modelling Sun Jul 23 15:38:07 2017 STATUS CHANGED : R -> P Sun Jul 23 15:38:07 2017 INFO : Checking topology... Sun Jul 23 16:04:44 2017 INFO : Knot matrices done... Sun Jul 23 16:05:13 2017 INFO : No knots found... Sun Jul 23 16:08:56 2017 INFO : Some lassos found! Sun Jul 23 16:08:56 2017 INFO : Finishing... Sun Jul 23 16:08:57 2017 INFO : Job done Sun Jul 23 16:08:57 2017 STATUS CHANGED : P -> F Sun Jul 23 16:08:57 2017 STATUS CHANGED : F -> F |
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