| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 31-221 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 25-175 | |||||
| Model 2 | Knot | K 31 | 31-221 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 25-175 | |||||
| Model 3 | Knot | K 31 | 31-221 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 25-175 | |||||
| Model 4 | Knot | K 31 | 31-221 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 25-175 | |||||
| Model 5 | Knot | K 31 | 32-221 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 25-175 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4YGF |
A |
Unknot |
100.00% |
100.00% |
100.00% |
0.62 |
..Target: TKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:34:21 2017 JOB CREATED : 811d06af-40a2-43ad-ad00-cb3e373f79ac Fri Dec 1 09:35:02 2017 STATUS CHANGED : N -> R Fri Dec 1 09:35:02 2017 INFO : JOB STARTED AT: 2017-12-01 09:35:02.141508 Fri Dec 1 09:35:02 2017 INFO : METHOD: 1 Fri Dec 1 09:35:02 2017 INFO : Building Profile... Fri Dec 1 09:35:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 09:50:20 2017 INFO : Homologue pool found... Fri Dec 1 09:50:20 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 10:25:34 2017 INFO : Starting homologue filtering... Fri Dec 1 10:26:20 2017 INFO : Getting structures from PDB... Fri Dec 1 10:26:27 2017 INFO : Creating modelling alignment... Fri Dec 1 10:26:27 2017 INFO : Modelling... Fri Dec 1 10:28:41 2017 INFO : Model 1 built Fri Dec 1 10:28:41 2017 INFO : Validating Calpha distances... Fri Dec 1 10:28:41 2017 INFO : Model 1 distances correct: True Fri Dec 1 10:28:41 2017 INFO : Modelling... Fri Dec 1 10:32:20 2017 INFO : Model 2 built Fri Dec 1 10:32:20 2017 INFO : Validating Calpha distances... Fri Dec 1 10:32:20 2017 INFO : Model 2 distances correct: True Fri Dec 1 10:32:20 2017 INFO : Modelling... Fri Dec 1 10:37:59 2017 INFO : Model 3 built Fri Dec 1 10:37:59 2017 INFO : Validating Calpha distances... Fri Dec 1 10:37:59 2017 INFO : Model 3 distances correct: True Fri Dec 1 10:37:59 2017 INFO : Modelling... Fri Dec 1 10:40:33 2017 INFO : Model 4 built Fri Dec 1 10:40:33 2017 INFO : Validating Calpha distances... Fri Dec 1 10:40:33 2017 INFO : Model 4 distances correct: True Fri Dec 1 10:40:33 2017 INFO : Modelling... Fri Dec 1 10:42:45 2017 INFO : Model 5 built Fri Dec 1 10:42:45 2017 INFO : Validating Calpha distances... Fri Dec 1 10:42:45 2017 INFO : Model 5 distances correct: True Fri Dec 1 10:43:23 2017 INFO : Finished modelling Fri Dec 1 10:43:23 2017 STATUS CHANGED : R -> P Fri Dec 1 10:43:23 2017 INFO : Checking topology... Fri Dec 1 10:44:23 2017 INFO : Knot matrices done... Fri Dec 1 10:45:35 2017 INFO : Some knots found! Fri Dec 1 10:45:57 2017 INFO : Some lassos found! Fri Dec 1 10:45:57 2017 INFO : Finishing... Fri Dec 1 10:45:57 2017 STATUS CHANGED : P -> E Fri Dec 1 10:45:57 2017 ERROR : Error while finishing Fri Dec 1 10:45:57 2017 STATUS CHANGED : E -> F |
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