GapRepairer

Models

Number of gaps:1

Gap lengths: 20

Model	Entanglement	Average	DOPE-HR (by gap length)
		DOPE-HR	1st gap
Model 1	Unknot	-31406	-3898
Model 2	Unknot	-31113	-3647
Model 3	Unknot	-31241	-3581
Model 4	Unknot	-31144	-3540
Model 5	Unknot	-31222	-3522
Colour the base model according to the B-factor (lowest to highest)				Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Mon Aug 27 13:06:34 2018	JOB CREATED : 8422b5dc-2144-4305-8377-ffded5cef919
Mon Aug 27 13:07:01 2018	STATUS CHANGED : N -> R
Mon Aug 27 13:07:01 2018	INFO : JOB STARTED AT: 2018-08-27 13:07:01.768841
Mon Aug 27 13:07:01 2018	INFO : METHOD: 4
Mon Aug 27 13:07:04 2018	INFO : Homologue pool found...
Mon Aug 27 13:07:04 2018	ERROR : No homologues found using selected method. Maybe try specifying your own?
Mon Aug 27 13:07:04 2018	INFO : Proceeding using de novo modelling
Mon Aug 27 13:07:04 2018	INFO : Verifying structure sequences of homologues...
Mon Aug 27 13:07:04 2018	INFO : Getting structures from PDB...
Mon Aug 27 13:07:05 2018	INFO : Creating modelling alignment...
Mon Aug 27 13:07:05 2018	INFO : Modelling...
Mon Aug 27 13:13:15 2018	INFO : Model 1 built
Mon Aug 27 13:13:15 2018	INFO : Validating Calpha distances...
Mon Aug 27 13:13:15 2018	INFO : Model 1 distances correct: True
Mon Aug 27 13:13:15 2018	INFO : Modelling...
Mon Aug 27 13:19:04 2018	INFO : Model 2 built
Mon Aug 27 13:19:04 2018	INFO : Validating Calpha distances...
Mon Aug 27 13:19:04 2018	INFO : Model 2 distances correct: True
Mon Aug 27 13:19:04 2018	INFO : Modelling...
Mon Aug 27 13:24:22 2018	INFO : Model 3 built
Mon Aug 27 13:24:22 2018	INFO : Validating Calpha distances...
Mon Aug 27 13:24:22 2018	INFO : Model 3 distances correct: True
Mon Aug 27 13:24:22 2018	INFO : Modelling...
Mon Aug 27 13:29:55 2018	INFO : Model 4 built
Mon Aug 27 13:29:55 2018	INFO : Validating Calpha distances...
Mon Aug 27 13:29:55 2018	INFO : Model 4 distances correct: True
Mon Aug 27 13:29:55 2018	INFO : Modelling...
Mon Aug 27 13:37:48 2018	INFO : Model 5 built
Mon Aug 27 13:37:48 2018	INFO : Validating Calpha distances...
Mon Aug 27 13:37:48 2018	INFO : Model 5 distances correct: True
Mon Aug 27 13:38:11 2018	INFO : Finished modelling
Mon Aug 27 13:38:11 2018	STATUS CHANGED : R -> P
Mon Aug 27 13:38:17 2018	INFO : Finished edm surfaces: success
Mon Aug 27 13:38:17 2018	INFO : Checking topology...
Mon Aug 27 13:38:54 2018	INFO : Knot matrices done...
Mon Aug 27 13:38:54 2018	INFO : No knots found...
Mon Aug 27 13:38:54 2018	INFO : No lassos found...
Mon Aug 27 13:38:54 2018	INFO : Finishing...
Mon Aug 27 13:38:54 2018	INFO : Job done
Mon Aug 27 13:38:54 2018	STATUS CHANGED : P -> F
Mon Aug 27 13:38:54 2018	STATUS CHANGED : F -> F

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