Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
---|---|---|---|---|---|---|---|---|---|
range | loop range | loop | position | in JSmol | |||||
Model 1 | Knot | K 31 | 10-271 | -- | -- | -- | |||
Model 2 | Knot | K 31 | 10-272 | -- | -- | -- | |||
Model 3 | Knot | K 31 | 9-272 | -- | -- | -- | |||
Model 4 | Knot | K 31 | 10-272 | -- | -- | -- | |||
Model 5 | Knot | K 31 | 9-271 | -- | -- | -- | |||
None |
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
1FUG |
A |
K +31 |
100.00% |
100.00% |
100.00% |
0.94 |
..Target: AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK |
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:44:23 2017 JOB CREATED : 88c7d2d1-b09e-41ea-b332-253821fe8a6a Fri Dec 1 20:44:02 2017 STATUS CHANGED : N -> R Fri Dec 1 20:44:02 2017 INFO : JOB STARTED AT: 2017-12-01 20:44:02.579220 Fri Dec 1 20:44:02 2017 INFO : METHOD: 1 Fri Dec 1 20:44:02 2017 INFO : Precalculated profile found... Fri Dec 1 20:44:02 2017 INFO : Homologue pool found... Fri Dec 1 20:44:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 20:46:23 2017 INFO : Starting homologue filtering... Fri Dec 1 20:47:19 2017 INFO : Getting structures from PDB... Fri Dec 1 20:47:27 2017 INFO : Creating modelling alignment... Fri Dec 1 20:47:27 2017 INFO : Modelling... Fri Dec 1 20:49:59 2017 INFO : Model 1 built Fri Dec 1 20:49:59 2017 INFO : Validating Calpha distances... Fri Dec 1 20:49:59 2017 INFO : Model 1 distances correct: True Fri Dec 1 20:49:59 2017 INFO : Modelling... Fri Dec 1 20:52:30 2017 INFO : Model 2 built Fri Dec 1 20:52:30 2017 INFO : Validating Calpha distances... Fri Dec 1 20:52:30 2017 INFO : Model 2 distances correct: True Fri Dec 1 20:52:30 2017 INFO : Modelling... Fri Dec 1 20:54:55 2017 INFO : Model 3 built Fri Dec 1 20:54:55 2017 INFO : Validating Calpha distances... Fri Dec 1 20:54:55 2017 INFO : Model 3 distances correct: True Fri Dec 1 20:54:55 2017 INFO : Modelling... Fri Dec 1 20:57:22 2017 INFO : Model 4 built Fri Dec 1 20:57:22 2017 INFO : Validating Calpha distances... Fri Dec 1 20:57:22 2017 INFO : Model 4 distances correct: True Fri Dec 1 20:57:22 2017 INFO : Modelling... Fri Dec 1 20:59:46 2017 INFO : Model 5 built Fri Dec 1 20:59:46 2017 INFO : Validating Calpha distances... Fri Dec 1 20:59:46 2017 INFO : Model 5 distances correct: True Fri Dec 1 21:00:37 2017 INFO : Finished modelling Fri Dec 1 21:00:37 2017 STATUS CHANGED : R -> P Fri Dec 1 21:00:37 2017 INFO : Checking topology... Fri Dec 1 21:02:54 2017 INFO : Knot matrices done... Fri Dec 1 21:04:32 2017 INFO : Some knots found! Fri Dec 1 21:04:32 2017 INFO : No lassos found... Fri Dec 1 21:04:32 2017 INFO : Finishing... Fri Dec 1 21:04:32 2017 STATUS CHANGED : P -> E Fri Dec 1 21:04:32 2017 ERROR : Error while finishing Fri Dec 1 21:04:32 2017 STATUS CHANGED : E -> F |