| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L +1N | -- | -- | 292-747 | +280 | |||
| Model 2 | Lasso | L +1N | -- | -- | 292-747 | +279 | |||
| Model 3 | Lasso | L +1N | -- | -- | 292-747 | +279 | |||
| Model 4 | Lasso | L +1N | -- | -- | 518-632 | +499 | |||
| Model 5 | Lasso | L +1N | -- | -- | 518-632 | +499 | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1CQI |
A |
Unknot |
36.01% |
87.50% |
31.25% |
1.18 |
..Target: SAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGHRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTG-----DHKQKFYWGHK-------------EILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIP--EALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTD---GVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVANGVIVP |
||||
Sun Jul 23 14:59:26 2017 JOB CREATED : 8dc29af2-36c4-4b6d-9e22-d978cd420352 Sun Jul 23 22:51:01 2017 STATUS CHANGED : N -> R Sun Jul 23 22:51:01 2017 INFO : JOB STARTED AT: 2017-07-23 22:51:01.949298 Sun Jul 23 22:51:01 2017 INFO : METHOD: 1 Sun Jul 23 22:51:02 2017 INFO : Precalculated profile found... Sun Jul 23 22:51:02 2017 INFO : Homologue pool found... Sun Jul 23 22:51:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 22:53:34 2017 INFO : Starting homologue filtering... Sun Jul 23 22:54:37 2017 INFO : Getting structures from PDB... Sun Jul 23 22:54:41 2017 INFO : Creating modelling alignment... Sun Jul 23 22:54:41 2017 INFO : Modelling... Sun Jul 23 23:33:16 2017 INFO : Model 1 built Sun Jul 23 23:33:16 2017 INFO : Validating Calpha distances... Sun Jul 23 23:33:16 2017 INFO : Model 1 distances correct: True Sun Jul 23 23:33:16 2017 INFO : Modelling... Mon Jul 24 00:04:15 2017 INFO : Model 2 built Mon Jul 24 00:04:15 2017 INFO : Validating Calpha distances... Mon Jul 24 00:04:15 2017 INFO : Model 2 distances correct: True Mon Jul 24 00:04:15 2017 INFO : Modelling... Mon Jul 24 00:34:23 2017 INFO : Model 3 built Mon Jul 24 00:34:23 2017 INFO : Validating Calpha distances... Mon Jul 24 00:34:23 2017 INFO : Model 3 distances correct: True Mon Jul 24 00:34:23 2017 INFO : Modelling... Mon Jul 24 01:07:24 2017 INFO : Model 4 built Mon Jul 24 01:07:24 2017 INFO : Validating Calpha distances... Mon Jul 24 01:07:24 2017 INFO : Model 4 distances correct: True Mon Jul 24 01:07:24 2017 INFO : Modelling... Mon Jul 24 01:38:50 2017 INFO : Model 5 built Mon Jul 24 01:38:50 2017 INFO : Validating Calpha distances... Mon Jul 24 01:38:50 2017 INFO : Model 5 distances correct: True Mon Jul 24 01:39:55 2017 INFO : Finished modelling Mon Jul 24 01:39:55 2017 STATUS CHANGED : R -> P Mon Jul 24 01:39:55 2017 INFO : Checking topology... Mon Jul 24 02:43:19 2017 INFO : Knot matrices done... Mon Jul 24 02:43:19 2017 INFO : No knots found... Mon Jul 24 02:47:13 2017 INFO : Some lassos found! Mon Jul 24 02:47:13 2017 INFO : Finishing... Mon Jul 24 02:47:14 2017 INFO : Job done Mon Jul 24 02:47:14 2017 STATUS CHANGED : P -> F Mon Jul 24 02:47:14 2017 STATUS CHANGED : F -> F |
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