Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
---|---|---|---|---|---|---|---|---|---|
range | loop range | loop | position | in JSmol | |||||
Model 1 | Slipknot | S 31 | 5-114 | 114-303 | -- | -- | |||
Model 2 | Slipknot | S 31 | 4-114 | 114-305 | -- | -- | |||
Model 3 | Slipknot | S 31 | 6-114 | 114-303 | -- | -- | |||
Model 4 | Slipknot | S 4131 | 4-114 | 114-303 | -- | -- | |||
Model 5 | Slipknot | S 31 | 4-114 | 114-303 | -- | -- | |||
None |
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
1E2J |
B |
S +31 |
99.68% |
212.50% |
212.50% |
0.54 |
..Target: MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE |
||||
1E2K |
B |
S +31 |
100.00% |
212.50% |
212.50% |
0.57 |
..Target: MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE |
||||
1KI2 |
B |
S +31 |
99.68% |
175.00% |
175.00% |
0.70 |
..Target: MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE- |
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:41:03 2017 JOB CREATED : 8e511b92-ffb3-4b1e-aab2-d45917f8f4ec Fri Dec 1 17:02:02 2017 STATUS CHANGED : N -> R Fri Dec 1 17:02:02 2017 INFO : JOB STARTED AT: 2017-12-01 17:02:02.515516 Fri Dec 1 17:02:02 2017 INFO : METHOD: 1 Fri Dec 1 17:02:02 2017 INFO : Building Profile... Fri Dec 1 17:02:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 17:13:29 2017 INFO : Homologue pool found... Fri Dec 1 17:13:29 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 17:16:03 2017 INFO : Starting homologue filtering... Fri Dec 1 17:16:51 2017 INFO : Getting structures from PDB... Fri Dec 1 17:17:07 2017 INFO : Creating modelling alignment... Fri Dec 1 17:17:07 2017 INFO : Modelling... Fri Dec 1 17:23:34 2017 INFO : Model 1 built Fri Dec 1 17:23:34 2017 INFO : Validating Calpha distances... Fri Dec 1 17:23:34 2017 INFO : Model 1 distances correct: True Fri Dec 1 17:23:34 2017 INFO : Modelling... Fri Dec 1 17:30:21 2017 INFO : Model 2 built Fri Dec 1 17:30:21 2017 INFO : Validating Calpha distances... Fri Dec 1 17:30:21 2017 INFO : Model 2 distances correct: True Fri Dec 1 17:30:21 2017 INFO : Modelling... Fri Dec 1 17:37:15 2017 INFO : Model 3 built Fri Dec 1 17:37:15 2017 INFO : Validating Calpha distances... Fri Dec 1 17:37:15 2017 INFO : Model 3 distances correct: True Fri Dec 1 17:37:15 2017 INFO : Modelling... Fri Dec 1 17:44:35 2017 INFO : Model 4 built Fri Dec 1 17:44:35 2017 INFO : Validating Calpha distances... Fri Dec 1 17:44:35 2017 INFO : Model 4 distances correct: True Fri Dec 1 17:44:35 2017 INFO : Modelling... Fri Dec 1 17:51:56 2017 INFO : Model 5 built Fri Dec 1 17:51:56 2017 INFO : Validating Calpha distances... Fri Dec 1 17:51:56 2017 INFO : Model 5 distances correct: True Fri Dec 1 17:52:37 2017 INFO : Finished modelling Fri Dec 1 17:52:37 2017 STATUS CHANGED : R -> P Fri Dec 1 17:52:37 2017 INFO : Checking topology... Fri Dec 1 17:54:44 2017 INFO : Knot matrices done... Fri Dec 1 17:56:23 2017 INFO : Some knots found! Fri Dec 1 17:56:23 2017 INFO : No lassos found... Fri Dec 1 17:56:23 2017 INFO : Finishing... Fri Dec 1 17:56:23 2017 STATUS CHANGED : P -> E Fri Dec 1 17:56:23 2017 ERROR : Error while finishing Fri Dec 1 17:56:23 2017 STATUS CHANGED : E -> F |