| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 28-355 | 355-433 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 28-303 | 303-340 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 28-409 | 409-433 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 28-377 | 377-433 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 31-299 | 299-433 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3LRB |
A |
S +31,41,+31 |
99.02% |
100.00% |
100.00% |
1.09 |
..Target: -AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA |
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|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:49:19 2017 JOB CREATED : 9064767f-fb51-442d-8670-991c63cebc74 Sat Dec 2 02:47:03 2017 STATUS CHANGED : N -> R Sat Dec 2 02:47:03 2017 INFO : JOB STARTED AT: 2017-12-02 02:47:03.875810 Sat Dec 2 02:47:03 2017 INFO : METHOD: 1 Sat Dec 2 02:47:04 2017 INFO : Precalculated profile found... Sat Dec 2 02:47:04 2017 INFO : Homologue pool found... Sat Dec 2 02:47:04 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 02:48:00 2017 INFO : Starting homologue filtering... Sat Dec 2 02:48:57 2017 INFO : Getting structures from PDB... Sat Dec 2 02:49:13 2017 INFO : Creating modelling alignment... Sat Dec 2 02:49:13 2017 INFO : Modelling... Sat Dec 2 03:01:01 2017 INFO : Model 1 built Sat Dec 2 03:01:01 2017 INFO : Validating Calpha distances... Sat Dec 2 03:01:01 2017 INFO : Model 1 distances correct: True Sat Dec 2 03:01:01 2017 INFO : Modelling... Sat Dec 2 03:10:33 2017 INFO : Model 2 built Sat Dec 2 03:10:33 2017 INFO : Validating Calpha distances... Sat Dec 2 03:10:33 2017 INFO : Model 2 distances correct: True Sat Dec 2 03:10:33 2017 INFO : Modelling... Sat Dec 2 03:16:55 2017 INFO : Model 3 built Sat Dec 2 03:16:55 2017 INFO : Validating Calpha distances... Sat Dec 2 03:16:55 2017 INFO : Model 3 distances correct: True Sat Dec 2 03:16:55 2017 INFO : Modelling... Sat Dec 2 03:23:06 2017 INFO : Model 4 built Sat Dec 2 03:23:06 2017 INFO : Validating Calpha distances... Sat Dec 2 03:23:06 2017 INFO : Model 4 distances correct: True Sat Dec 2 03:23:06 2017 INFO : Modelling... Sat Dec 2 03:29:21 2017 INFO : Model 5 built Sat Dec 2 03:29:21 2017 INFO : Validating Calpha distances... Sat Dec 2 03:29:21 2017 INFO : Model 5 distances correct: True Sat Dec 2 03:30:14 2017 INFO : Finished modelling Sat Dec 2 03:30:14 2017 STATUS CHANGED : R -> P Sat Dec 2 03:30:14 2017 INFO : Checking topology... Sat Dec 2 04:31:41 2017 INFO : Knot matrices done... Sat Dec 2 04:34:19 2017 INFO : Some knots found! Sat Dec 2 04:34:19 2017 INFO : No lassos found... Sat Dec 2 04:34:19 2017 INFO : Finishing... Sat Dec 2 04:34:19 2017 STATUS CHANGED : P -> E Sat Dec 2 04:34:19 2017 ERROR : Error while finishing Sat Dec 2 04:34:19 2017 STATUS CHANGED : E -> F |
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