| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4ARJ |
A |
Unknot |
59.43% |
100.00% |
20.00% |
0.78 |
..Target: NYYATLLTLLIAVIVFGNVLVCMAVSREKALQTTTNY---LIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASALNLCAISIDRYTAVAMPMLYNTRYS---SKRRVTVMISIVWVLSFTI--SCPLLFGLNNAD-----QNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKLSQQKEKKATQMAAIVAGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILH |
||||
Fri Jul 27 13:52:29 2018 JOB CREATED : 9ff61836-93e0-4c81-93a6-674819c85f61 Fri Jul 27 13:53:02 2018 STATUS CHANGED : N -> R Fri Jul 27 13:53:02 2018 INFO : JOB STARTED AT: 2018-07-27 13:53:02.382867 Fri Jul 27 13:53:02 2018 INFO : METHOD: 1 Fri Jul 27 13:53:02 2018 INFO : Building Profile... Fri Jul 27 13:53:02 2018 INFO : --E-value set to 0.001-- Fri Jul 27 14:18:30 2018 INFO : Homologue pool found... Fri Jul 27 14:18:30 2018 INFO : Verifying structure sequences of homologues... Fri Jul 27 14:46:01 2018 INFO : Starting homologue filtering... Fri Jul 27 14:46:37 2018 INFO : Getting structures from PDB... Fri Jul 27 14:46:40 2018 INFO : Creating modelling alignment... Fri Jul 27 14:46:40 2018 INFO : Modelling... Fri Jul 27 15:34:15 2018 INFO : Model 1 built Fri Jul 27 15:34:15 2018 INFO : Validating Calpha distances... Fri Jul 27 15:34:15 2018 INFO : Model 1 distances correct: True Fri Jul 27 15:34:15 2018 INFO : Modelling... Fri Jul 27 15:49:14 2018 INFO : Model 2 built Fri Jul 27 15:49:14 2018 INFO : Validating Calpha distances... Fri Jul 27 15:49:14 2018 INFO : Model 2 distances correct: True Fri Jul 27 15:49:14 2018 INFO : Modelling... Fri Jul 27 16:35:23 2018 INFO : Model 3 built Fri Jul 27 16:35:23 2018 INFO : Validating Calpha distances... Fri Jul 27 16:35:23 2018 INFO : Model 3 distances correct: True Fri Jul 27 16:35:23 2018 INFO : Modelling... Fri Jul 27 16:50:30 2018 INFO : Model 4 built Fri Jul 27 16:50:30 2018 INFO : Validating Calpha distances... Fri Jul 27 16:50:30 2018 INFO : Model 4 distances correct: True Fri Jul 27 16:50:30 2018 INFO : Modelling... Fri Jul 27 17:26:20 2018 INFO : Model 5 built Fri Jul 27 17:26:20 2018 INFO : Validating Calpha distances... Fri Jul 27 17:26:20 2018 INFO : Model 5 distances correct: True Fri Jul 27 17:26:49 2018 INFO : Finished modelling Fri Jul 27 17:26:49 2018 STATUS CHANGED : R -> P Fri Jul 27 17:26:50 2018 INFO : Finished edm surfaces: no map Fri Jul 27 17:26:50 2018 INFO : Checking topology... Fri Jul 27 17:28:08 2018 INFO : Knot matrices done... Fri Jul 27 17:28:08 2018 INFO : No knots found... Fri Jul 27 17:28:09 2018 INFO : No lassos found... Fri Jul 27 17:28:09 2018 INFO : Finishing... Fri Jul 27 17:28:10 2018 INFO : Job done Fri Jul 27 17:28:10 2018 STATUS CHANGED : P -> F Fri Jul 27 17:28:10 2018 STATUS CHANGED : F -> F |
GapRepairer