| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 92-137 | -- | -- | -- | |||
| Model 2 | Knot | K 31 | 92-137 | -- | -- | -- | |||
| Model 3 | Knot | K 31 | 92-137 | -- | -- | -- | |||
| Model 4 | Knot | K 31 | 92-137 | -- | -- | -- | |||
| Model 5 | Knot | K 31 | 92-137 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4JWF |
A |
K +31 |
43.85% |
100.00% |
40.00% |
0.91 |
..Target: ----RDVVHSTLRLIIDCSFDHLXVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNXDENDKGWV-NWKDIHIKPEHY-SEL-IKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKXNSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Sep 20 14:52:12 2019 JOB CREATED : a19b5c89-dad9-4fc7-ba3f-9926757ebb4d Fri Sep 20 14:53:02 2019 STATUS CHANGED : N -> R Fri Sep 20 14:53:02 2019 INFO : JOB STARTED AT: 2019-09-20 14:53:02.268157 Fri Sep 20 14:53:02 2019 INFO : METHOD: 1 Fri Sep 20 14:53:02 2019 INFO : Precalculated profile found... Fri Sep 20 14:53:02 2019 INFO : Homologue pool found... Fri Sep 20 14:53:02 2019 INFO : Verifying structure sequences of homologues... Fri Sep 20 14:53:13 2019 INFO : Starting homologue filtering... Fri Sep 20 14:53:17 2019 INFO : Getting structures from PDB... Fri Sep 20 14:53:19 2019 INFO : Creating modelling alignment... Fri Sep 20 14:53:19 2019 INFO : Modelling... Fri Sep 20 14:55:28 2019 INFO : Model 1 built Fri Sep 20 14:55:28 2019 INFO : Validating Calpha distances... Fri Sep 20 14:55:28 2019 INFO : Model 1 distances correct: True Fri Sep 20 14:55:28 2019 INFO : Modelling... Fri Sep 20 14:57:35 2019 INFO : Model 2 built Fri Sep 20 14:57:35 2019 INFO : Validating Calpha distances... Fri Sep 20 14:57:35 2019 INFO : Model 2 distances correct: True Fri Sep 20 14:57:35 2019 INFO : Modelling... Fri Sep 20 14:59:43 2019 INFO : Model 3 built Fri Sep 20 14:59:43 2019 INFO : Validating Calpha distances... Fri Sep 20 14:59:43 2019 INFO : Model 3 distances correct: True Fri Sep 20 14:59:43 2019 INFO : Modelling... Fri Sep 20 15:03:04 2019 INFO : Model 4 built Fri Sep 20 15:03:04 2019 INFO : Validating Calpha distances... Fri Sep 20 15:03:04 2019 INFO : Model 4 distances correct: True Fri Sep 20 15:03:04 2019 INFO : Modelling... Fri Sep 20 15:05:12 2019 INFO : Model 5 built Fri Sep 20 15:05:12 2019 INFO : Validating Calpha distances... Fri Sep 20 15:05:12 2019 INFO : Model 5 distances correct: True Fri Sep 20 15:05:23 2019 INFO : Finished modelling Fri Sep 20 15:05:23 2019 STATUS CHANGED : R -> P Fri Sep 20 15:05:48 2019 INFO : Finished edm surfaces: success Fri Sep 20 15:05:48 2019 INFO : Checking topology... Fri Sep 20 15:06:38 2019 INFO : Knot matrices done... Fri Sep 20 15:07:17 2019 INFO : Some knots found! Fri Sep 20 15:07:17 2019 INFO : No lassos found... Fri Sep 20 15:07:17 2019 INFO : Finishing... Fri Sep 20 15:07:18 2019 INFO : Job done Fri Sep 20 15:07:18 2019 STATUS CHANGED : P -> F Fri Sep 20 15:07:18 2019 STATUS CHANGED : F -> F |
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