| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 357-459 | 459-485 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 175-459 | 459-459 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1GV4 |
A |
S -31 |
93.06% |
100.00% |
78.57% |
0.69 |
..Target: ---QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYXRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNXVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNXGKILPEYLSNWTXEKVRREGVKVXPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENXTGAAKPYWHQSXFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRXPIARKIIKDGEQHEDLNEVAKLFNIH |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_4 |
Fri Dec 1 09:52:25 2017 JOB CREATED : a3274263-f5ca-414c-9fc0-03bd441cb20e Sat Dec 2 06:12:02 2017 STATUS CHANGED : N -> R Sat Dec 2 06:12:02 2017 INFO : JOB STARTED AT: 2017-12-02 06:12:02.907574 Sat Dec 2 06:12:02 2017 INFO : METHOD: 1 Sat Dec 2 06:12:03 2017 INFO : Precalculated profile found... Sat Dec 2 06:12:03 2017 INFO : Homologue pool found... Sat Dec 2 06:12:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 06:39:04 2017 INFO : Starting homologue filtering... Sat Dec 2 06:40:24 2017 INFO : Getting structures from PDB... Sat Dec 2 06:40:37 2017 INFO : Creating modelling alignment... Sat Dec 2 06:40:37 2017 INFO : Modelling... Sat Dec 2 06:45:06 2017 INFO : Model 1 built Sat Dec 2 06:45:06 2017 INFO : Validating Calpha distances... Sat Dec 2 06:45:06 2017 INFO : Model 1 distances correct: True Sat Dec 2 06:45:06 2017 INFO : Modelling... Sat Dec 2 06:49:18 2017 INFO : Model 2 built Sat Dec 2 06:49:18 2017 INFO : Validating Calpha distances... Sat Dec 2 06:49:18 2017 INFO : Model 2 distances correct: True Sat Dec 2 06:49:18 2017 INFO : Modelling... Sat Dec 2 06:53:34 2017 INFO : Model 3 built Sat Dec 2 06:53:34 2017 INFO : Validating Calpha distances... Sat Dec 2 06:53:34 2017 INFO : Model 3 distances correct: True Sat Dec 2 06:53:34 2017 INFO : Modelling... Sat Dec 2 06:57:36 2017 INFO : Model 4 built Sat Dec 2 06:57:36 2017 INFO : Validating Calpha distances... Sat Dec 2 06:57:36 2017 INFO : Model 4 distances correct: True Sat Dec 2 06:57:36 2017 INFO : Modelling... Sat Dec 2 07:01:48 2017 INFO : Model 5 built Sat Dec 2 07:01:48 2017 INFO : Validating Calpha distances... Sat Dec 2 07:01:48 2017 INFO : Model 5 distances correct: True Sat Dec 2 07:02:48 2017 INFO : Finished modelling Sat Dec 2 07:02:48 2017 STATUS CHANGED : R -> P Sat Dec 2 07:02:48 2017 INFO : Checking topology... Sat Dec 2 07:06:04 2017 INFO : Knot matrices done... Sat Dec 2 07:08:25 2017 INFO : Some knots found! Sat Dec 2 07:08:25 2017 INFO : No lassos found... Sat Dec 2 07:08:25 2017 INFO : Finishing... Sat Dec 2 07:08:25 2017 STATUS CHANGED : P -> E Sat Dec 2 07:08:25 2017 ERROR : Error while finishing Sat Dec 2 07:08:25 2017 STATUS CHANGED : E -> F |
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