| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 28-237 | 237-245 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +33 | ||||
| Model 2 | Slipknot | S 31 | 16-237 | 237-246 | -- | -- | |||
| Lasso | LL +1,+2 | -- | -- | 44-160 | +33 | ||||
| Model 3 | Slipknot | S 31 | 16-237 | 237-245 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +32 | ||||
| Model 4 | Slipknot | S 31 | 17-237 | 237-245 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +33 | ||||
| Model 5 | Slipknot | S 31 | 17-237 | 237-246 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +33 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5EA5 |
F |
Unknown |
99.53% |
61.54% |
61.54% |
0.81 |
..Target: QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATNNRARRFLGFLLGVGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL |
||||
5EA8 |
F |
Unknown |
99.78% |
61.54% |
61.54% |
0.91 |
..Target: QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATNNRARRFLGFLLGVGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:36:06 2017 JOB CREATED : a40c752c-0ddd-4e99-bf40-e8d5cd0fdd34 Fri Dec 1 10:27:02 2017 STATUS CHANGED : N -> R Fri Dec 1 10:27:02 2017 INFO : JOB STARTED AT: 2017-12-01 10:27:02.280047 Fri Dec 1 10:27:02 2017 INFO : METHOD: 1 Fri Dec 1 10:27:02 2017 INFO : Building Profile... Fri Dec 1 10:27:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 11:01:53 2017 INFO : Homologue pool found... Fri Dec 1 11:01:53 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 11:12:00 2017 INFO : Starting homologue filtering... Fri Dec 1 11:12:53 2017 INFO : Getting structures from PDB... Fri Dec 1 11:13:20 2017 INFO : Creating modelling alignment... Fri Dec 1 11:13:20 2017 INFO : Modelling... Fri Dec 1 11:18:19 2017 INFO : Model 1 built Fri Dec 1 11:18:19 2017 INFO : Validating Calpha distances... Fri Dec 1 11:18:19 2017 INFO : Model 1 distances correct: True Fri Dec 1 11:18:19 2017 INFO : Modelling... Fri Dec 1 11:23:15 2017 INFO : Model 2 built Fri Dec 1 11:23:15 2017 INFO : Validating Calpha distances... Fri Dec 1 11:23:15 2017 INFO : Model 2 distances correct: True Fri Dec 1 11:23:15 2017 INFO : Modelling... Fri Dec 1 11:28:01 2017 INFO : Model 3 built Fri Dec 1 11:28:01 2017 INFO : Validating Calpha distances... Fri Dec 1 11:28:01 2017 INFO : Model 3 distances correct: True Fri Dec 1 11:28:01 2017 INFO : Modelling... Fri Dec 1 11:32:46 2017 INFO : Model 4 built Fri Dec 1 11:32:46 2017 INFO : Validating Calpha distances... Fri Dec 1 11:32:46 2017 INFO : Model 4 distances correct: True Fri Dec 1 11:32:46 2017 INFO : Modelling... Fri Dec 1 11:41:26 2017 INFO : Model 5 built Fri Dec 1 11:41:26 2017 INFO : Validating Calpha distances... Fri Dec 1 11:41:26 2017 INFO : Model 5 distances correct: True Fri Dec 1 11:42:20 2017 INFO : Finished modelling Fri Dec 1 11:42:20 2017 STATUS CHANGED : R -> P Fri Dec 1 11:42:20 2017 INFO : Checking topology... Fri Dec 1 11:45:04 2017 INFO : Knot matrices done... Fri Dec 1 11:47:20 2017 INFO : Some knots found! Fri Dec 1 11:48:31 2017 INFO : Some lassos found! Fri Dec 1 11:48:31 2017 INFO : Finishing... Fri Dec 1 11:48:31 2017 STATUS CHANGED : P -> E Fri Dec 1 11:48:31 2017 ERROR : Error while finishing Fri Dec 1 11:48:31 2017 STATUS CHANGED : E -> F |
GapRepairer