| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 9-260 | 260-287 | -- | -- | |||
| Lasso | L +3N | -- | -- | 76-480 | +11,-51,+68 | ||||
| Model 2 | Slipknot | S 31 | 9-260 | 260-287 | -- | -- | |||
| Lasso | L +3N | -- | -- | 76-480 | +11,-50,+68 | ||||
| Model 3 | Slipknot | S 31 | 10-260 | 260-287 | -- | -- | |||
| Lasso | L +3N | -- | -- | 76-480 | +11,-50,+68 | ||||
| Model 4 | Knot | K 31 | 373-429 | -- | -- | -- | |||
| Lasso | L +3N | -- | -- | 76-480 | +12,-50,+68 | ||||
| Model 5 | Slipknot | S 31 | 9-260 | 260-289 | -- | -- | |||
| Lasso | L +3N | -- | -- | 76-480 | +11,-50,+68 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1P49 |
A |
S +31 |
27.69% |
100.00% |
27.78% |
1.12 |
..Target: SRP-PHLVFLLADDLGWNDVGFHGSR-IRTPHLDALAAGGVLLDNYY-TQPLXTPSRSQLLTGRYQIRTGL-----QHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGM----YRKEC-LPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYK-------NMYSTNIFTKRAI-ALITNHPP---------EKPLFLYLALQSVH-------------EPLQVPEEY--------LKPYDFIQ---------------------------DKNRHH-YAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNG---------GQTLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPC-PRNSMAPAKDDSSLPEYS--AFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPTKTLWLFDIDRDPEERHDL---SREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGVWGPW----------------M |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:43:50 2017 JOB CREATED : a6d4fc20-c474-4a9f-a58a-7e3bd5897460 Fri Dec 1 20:24:02 2017 STATUS CHANGED : N -> R Fri Dec 1 20:24:02 2017 INFO : JOB STARTED AT: 2017-12-01 20:24:02.987726 Fri Dec 1 20:24:02 2017 INFO : METHOD: 1 Fri Dec 1 20:24:03 2017 INFO : Precalculated profile found... Fri Dec 1 20:24:03 2017 INFO : Homologue pool found... Fri Dec 1 20:24:03 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 20:27:23 2017 INFO : Starting homologue filtering... Fri Dec 1 20:28:38 2017 INFO : Getting structures from PDB... Fri Dec 1 20:28:45 2017 INFO : Creating modelling alignment... Fri Dec 1 20:28:45 2017 INFO : Modelling... Fri Dec 1 20:48:01 2017 INFO : Model 1 built Fri Dec 1 20:48:01 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 21:17:26 2017 INFO : Validating Calpha distances... Fri Dec 1 21:17:26 2017 INFO : Model 1 distances correct: True Fri Dec 1 21:17:26 2017 INFO : Modelling... Fri Dec 1 21:27:39 2017 INFO : Model 2 built Fri Dec 1 21:27:39 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 21:51:37 2017 INFO : Validating Calpha distances... Fri Dec 1 21:51:37 2017 INFO : Model 2 distances correct: True Fri Dec 1 21:51:37 2017 INFO : Modelling... Fri Dec 1 21:57:24 2017 INFO : Model 3 built Fri Dec 1 21:57:24 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 22:16:36 2017 INFO : Validating Calpha distances... Fri Dec 1 22:16:36 2017 INFO : Model 3 distances correct: True Fri Dec 1 22:16:36 2017 INFO : Modelling... Fri Dec 1 22:30:43 2017 INFO : Model 4 built Fri Dec 1 22:30:43 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 23:06:55 2017 INFO : Validating Calpha distances... Fri Dec 1 23:06:55 2017 INFO : Model 4 distances correct: True Fri Dec 1 23:06:55 2017 INFO : Modelling... Fri Dec 1 23:15:57 2017 INFO : Model 5 built Fri Dec 1 23:15:57 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 23:43:31 2017 INFO : Validating Calpha distances... Fri Dec 1 23:43:31 2017 INFO : Model 5 distances correct: True Fri Dec 1 23:44:37 2017 INFO : Finished modelling Fri Dec 1 23:44:37 2017 STATUS CHANGED : R -> P Fri Dec 1 23:44:37 2017 INFO : Checking topology... Fri Dec 1 23:48:47 2017 INFO : Knot matrices done... Fri Dec 1 23:51:29 2017 INFO : Some knots found! Fri Dec 1 23:56:57 2017 INFO : Some lassos found! Fri Dec 1 23:56:57 2017 INFO : Finishing... Fri Dec 1 23:56:57 2017 STATUS CHANGED : P -> E Fri Dec 1 23:56:57 2017 ERROR : Error while finishing Fri Dec 1 23:56:57 2017 STATUS CHANGED : E -> F |
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