| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 36-386 | 386-401 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 36-438 | 438-447 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 36-386 | 386-401 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 36-386 | 386-403 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 36-425 | 425-447 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2A65 |
A |
S +31,41,+31 |
97.45% |
66.67% |
66.67% |
0.96 |
..Target: REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYFVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLA--------ERR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:38:24 2017 JOB CREATED : a966c2c0-8432-4f79-893f-4d903f34037c Fri Dec 1 13:04:02 2017 STATUS CHANGED : N -> R Fri Dec 1 13:04:02 2017 INFO : JOB STARTED AT: 2017-12-01 13:04:02.438045 Fri Dec 1 13:04:02 2017 INFO : METHOD: 1 Fri Dec 1 13:04:02 2017 INFO : Precalculated profile found... Fri Dec 1 13:04:02 2017 INFO : Homologue pool found... Fri Dec 1 13:04:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 13:06:09 2017 INFO : Starting homologue filtering... Fri Dec 1 13:07:22 2017 INFO : Getting structures from PDB... Fri Dec 1 13:07:38 2017 INFO : Creating modelling alignment... Fri Dec 1 13:07:38 2017 INFO : Modelling... Fri Dec 1 13:26:32 2017 INFO : Model 1 built Fri Dec 1 13:26:32 2017 INFO : Validating Calpha distances... Fri Dec 1 13:26:32 2017 INFO : Model 1 distances correct: True Fri Dec 1 13:26:32 2017 INFO : Modelling... Fri Dec 1 13:44:17 2017 INFO : Model 2 built Fri Dec 1 13:44:17 2017 INFO : Validating Calpha distances... Fri Dec 1 13:44:17 2017 INFO : Model 2 distances correct: True Fri Dec 1 13:44:17 2017 INFO : Modelling... Fri Dec 1 14:12:17 2017 INFO : Model 3 built Fri Dec 1 14:12:17 2017 INFO : Validating Calpha distances... Fri Dec 1 14:12:17 2017 INFO : Model 3 distances correct: True Fri Dec 1 14:12:17 2017 INFO : Modelling... Fri Dec 1 14:40:52 2017 INFO : Model 4 built Fri Dec 1 14:40:52 2017 INFO : Validating Calpha distances... Fri Dec 1 14:40:52 2017 INFO : Model 4 distances correct: True Fri Dec 1 14:40:52 2017 INFO : Modelling... Fri Dec 1 15:08:29 2017 INFO : Model 5 built Fri Dec 1 15:08:29 2017 INFO : Validating Calpha distances... Fri Dec 1 15:08:29 2017 INFO : Model 5 distances correct: True Fri Dec 1 15:09:36 2017 INFO : Finished modelling Fri Dec 1 15:09:36 2017 STATUS CHANGED : R -> P Fri Dec 1 15:09:36 2017 INFO : Checking topology... Fri Dec 1 15:56:31 2017 INFO : Knot matrices done... Fri Dec 1 15:59:24 2017 INFO : Some knots found! Fri Dec 1 15:59:24 2017 INFO : No lassos found... Fri Dec 1 15:59:24 2017 INFO : Finishing... Fri Dec 1 15:59:24 2017 STATUS CHANGED : P -> E Fri Dec 1 15:59:24 2017 ERROR : Error while finishing Fri Dec 1 15:59:24 2017 STATUS CHANGED : E -> F |
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