| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 171-224 | -- | -- | -- | |||
| Model 2 | Knot | K 31 | 169-224 | -- | -- | -- | |||
| Model 3 | Knot | K 31 | 170-224 | -- | -- | -- | |||
| Model 5 | Knot | K 31 | 169-224 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1VHK |
C |
K +31 |
100.00% |
111.11% |
111.11% |
0.46 |
..Target: QRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQTELLR |
||||
4E8B |
A |
K +31 |
30.17% |
200.00% |
72.22% |
1.22 |
..Target: QRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGD--QIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLP-KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQ-TELLR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_5 |
Fri Dec 1 09:45:13 2017 JOB CREATED : abcff6f1-5e46-42a9-8ed8-c672e10aa171 Fri Dec 1 21:35:02 2017 STATUS CHANGED : N -> R Fri Dec 1 21:35:02 2017 INFO : JOB STARTED AT: 2017-12-01 21:35:02.987410 Fri Dec 1 21:35:02 2017 INFO : METHOD: 1 Fri Dec 1 21:35:03 2017 INFO : Precalculated profile found... Fri Dec 1 21:35:03 2017 INFO : Homologue pool found... Fri Dec 1 21:35:03 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 21:35:39 2017 INFO : Starting homologue filtering... Fri Dec 1 21:36:54 2017 INFO : Getting structures from PDB... Fri Dec 1 21:36:59 2017 INFO : Creating modelling alignment... Fri Dec 1 21:36:59 2017 INFO : Modelling... Fri Dec 1 21:44:57 2017 INFO : Model 1 built Fri Dec 1 21:44:57 2017 INFO : Validating Calpha distances... Fri Dec 1 21:44:57 2017 INFO : Model 1 distances correct: True Fri Dec 1 21:44:57 2017 INFO : Modelling... Fri Dec 1 21:49:54 2017 INFO : Model 2 built Fri Dec 1 21:49:54 2017 INFO : Validating Calpha distances... Fri Dec 1 21:49:54 2017 INFO : Model 2 distances correct: True Fri Dec 1 21:49:54 2017 INFO : Modelling... Fri Dec 1 22:03:55 2017 INFO : Model 3 built Fri Dec 1 22:03:55 2017 INFO : Validating Calpha distances... Fri Dec 1 22:03:55 2017 INFO : Model 3 distances correct: True Fri Dec 1 22:03:55 2017 INFO : Modelling... Fri Dec 1 22:11:25 2017 INFO : Model 4 built Fri Dec 1 22:11:25 2017 INFO : Validating Calpha distances... Fri Dec 1 22:11:25 2017 INFO : Model 4 distances correct: True Fri Dec 1 22:11:25 2017 INFO : Modelling... Fri Dec 1 22:22:46 2017 INFO : Model 5 built Fri Dec 1 22:22:46 2017 INFO : Validating Calpha distances... Fri Dec 1 22:22:46 2017 INFO : Model 5 distances correct: True Fri Dec 1 22:23:16 2017 INFO : Finished modelling Fri Dec 1 22:23:16 2017 STATUS CHANGED : R -> P Fri Dec 1 22:23:16 2017 INFO : Checking topology... Fri Dec 1 22:25:26 2017 INFO : Knot matrices done... Fri Dec 1 22:27:00 2017 INFO : Some knots found! Fri Dec 1 22:27:01 2017 INFO : No lassos found... Fri Dec 1 22:27:01 2017 INFO : Finishing... Fri Dec 1 22:27:01 2017 STATUS CHANGED : P -> E Fri Dec 1 22:27:01 2017 ERROR : Error while finishing Fri Dec 1 22:27:01 2017 STATUS CHANGED : E -> F |
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