| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 39-355 | 355-510 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 39-355 | 355-510 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 38-355 | 355-510 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 38-355 | 355-510 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 38-355 | 355-509 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:48:05 2017 JOB CREATED : ae18fb03-fb17-4e20-b7db-b721cba137f4 Sat Dec 2 00:49:02 2017 STATUS CHANGED : N -> R Sat Dec 2 00:49:02 2017 INFO : JOB STARTED AT: 2017-12-02 00:49:02.901057 Sat Dec 2 00:49:02 2017 INFO : METHOD: 1 Sat Dec 2 00:49:03 2017 INFO : Precalculated profile found... Sat Dec 2 00:49:03 2017 INFO : Homologue pool found... Sat Dec 2 00:49:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 00:51:21 2017 INFO : Starting homologue filtering... Sat Dec 2 00:52:34 2017 INFO : Getting structures from PDB... Sat Dec 2 00:52:35 2017 INFO : Creating modelling alignment... Sat Dec 2 00:52:35 2017 INFO : Modelling... Sat Dec 2 00:53:43 2017 INFO : Model 1 built Sat Dec 2 00:53:43 2017 INFO : Validating Calpha distances... Sat Dec 2 00:53:43 2017 INFO : Model 1 distances correct: True Sat Dec 2 00:53:43 2017 INFO : Modelling... Sat Dec 2 00:54:47 2017 INFO : Model 2 built Sat Dec 2 00:54:47 2017 INFO : Validating Calpha distances... Sat Dec 2 00:54:47 2017 INFO : Model 2 distances correct: True Sat Dec 2 00:54:47 2017 INFO : Modelling... Sat Dec 2 00:55:44 2017 INFO : Model 3 built Sat Dec 2 00:55:44 2017 INFO : Validating Calpha distances... Sat Dec 2 00:55:44 2017 INFO : Model 3 distances correct: True Sat Dec 2 00:55:44 2017 INFO : Modelling... Sat Dec 2 00:56:37 2017 INFO : Model 4 built Sat Dec 2 00:56:37 2017 INFO : Validating Calpha distances... Sat Dec 2 00:56:37 2017 INFO : Model 4 distances correct: True Sat Dec 2 00:56:37 2017 INFO : Modelling... Sat Dec 2 00:57:31 2017 INFO : Model 5 built Sat Dec 2 00:57:31 2017 INFO : Validating Calpha distances... Sat Dec 2 00:57:31 2017 INFO : Model 5 distances correct: True Sat Dec 2 00:58:41 2017 INFO : Finished modelling Sat Dec 2 00:58:41 2017 STATUS CHANGED : R -> P Sat Dec 2 00:58:41 2017 INFO : Checking topology... Sat Dec 2 01:39:54 2017 INFO : Knot matrices done... Sat Dec 2 01:42:59 2017 INFO : Some knots found! Sat Dec 2 01:42:59 2017 INFO : No lassos found... Sat Dec 2 01:42:59 2017 INFO : Finishing... Sat Dec 2 01:42:59 2017 STATUS CHANGED : P -> E Sat Dec 2 01:42:59 2017 ERROR : Error while finishing Sat Dec 2 01:42:59 2017 STATUS CHANGED : E -> F |
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