| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 129-415 | 415-526 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 129-415 | 415-526 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 129-415 | 415-526 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 129-415 | 415-526 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 129-415 | 415-526 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4AIN |
B |
S +31,41,+31 |
99.60% |
100.00% |
100.00% |
1.14 |
..Target: -SLNWSVIVPALVIVLATVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAASKFGTIRLGRIDEAPEFRTVSWISMMFAAGMGIDLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQMAGRTAMSADGTAGEWLGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSNDVIYLEYREQQRFNARLARERRVHNEHRKRELAAKRR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sat Aug 5 07:10:34 2017 JOB CREATED : b14d246e-33d0-4c48-a1ca-7d2d24a19bf6 Sat Aug 5 07:11:01 2017 STATUS CHANGED : N -> R Sat Aug 5 07:11:01 2017 INFO : JOB STARTED AT: 2017-08-05 07:11:01.876726 Sat Aug 5 07:11:01 2017 INFO : METHOD: 1 Sat Aug 5 07:11:02 2017 INFO : Building Profile... Sat Aug 5 07:11:02 2017 INFO : --E-value set to 0.001-- Sat Aug 5 07:20:44 2017 INFO : Homologue pool found... Sat Aug 5 07:20:44 2017 INFO : Verifying structure sequences of homologues... Sat Aug 5 07:21:19 2017 INFO : Starting homologue filtering... Sat Aug 5 07:21:49 2017 INFO : Getting structures from PDB... Sat Aug 5 07:21:58 2017 INFO : Creating modelling alignment... Sat Aug 5 07:21:58 2017 INFO : Modelling... Sat Aug 5 07:23:09 2017 INFO : Model 1 built Sat Aug 5 07:23:09 2017 INFO : Validating Calpha distances... Sat Aug 5 07:23:09 2017 INFO : Model 1 distances correct: True Sat Aug 5 07:23:09 2017 INFO : Modelling... Sat Aug 5 07:24:19 2017 INFO : Model 2 built Sat Aug 5 07:24:19 2017 INFO : Validating Calpha distances... Sat Aug 5 07:24:19 2017 INFO : Model 2 distances correct: True Sat Aug 5 07:24:19 2017 INFO : Modelling... Sat Aug 5 07:25:27 2017 INFO : Model 3 built Sat Aug 5 07:25:27 2017 INFO : Validating Calpha distances... Sat Aug 5 07:25:27 2017 INFO : Model 3 distances correct: True Sat Aug 5 07:25:27 2017 INFO : Modelling... Sat Aug 5 07:26:37 2017 INFO : Model 4 built Sat Aug 5 07:26:37 2017 INFO : Validating Calpha distances... Sat Aug 5 07:26:37 2017 INFO : Model 4 distances correct: True Sat Aug 5 07:26:37 2017 INFO : Modelling... Sat Aug 5 07:27:46 2017 INFO : Model 5 built Sat Aug 5 07:27:46 2017 INFO : Validating Calpha distances... Sat Aug 5 07:27:46 2017 INFO : Model 5 distances correct: True Sat Aug 5 07:28:21 2017 INFO : Finished modelling Sat Aug 5 07:28:21 2017 STATUS CHANGED : R -> P Sat Aug 5 07:28:21 2017 INFO : Checking topology... Sat Aug 5 13:56:58 2017 INFO : Knot matrices done... Sat Aug 5 13:59:43 2017 INFO : Some knots found! Sat Aug 5 13:59:43 2017 INFO : No lassos found... Sat Aug 5 13:59:43 2017 INFO : Finishing... Sat Aug 5 13:59:44 2017 INFO : Job done Sat Aug 5 13:59:44 2017 STATUS CHANGED : P -> F Sat Aug 5 13:59:44 2017 STATUS CHANGED : F -> F |
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