| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 2 | Slipknot | S 31 | 87-176 | 176-184 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 87-179 | 179-184 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1DUJ |
A |
Unknot |
98.40% |
100.00% |
100.00% |
1.66 |
..Target: ---TLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_2 Model_4 |
Fri Dec 1 09:35:03 2017 JOB CREATED : b34cc199-39ff-4eae-b1fb-789ba5cde025 Fri Dec 1 09:36:02 2017 STATUS CHANGED : N -> R Fri Dec 1 09:36:02 2017 INFO : JOB STARTED AT: 2017-12-01 09:36:02.163317 Fri Dec 1 09:36:02 2017 INFO : METHOD: 1 Fri Dec 1 09:36:02 2017 INFO : Building Profile... Fri Dec 1 09:36:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 09:43:35 2017 INFO : Homologue pool found... Fri Dec 1 09:43:35 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 09:44:58 2017 INFO : Starting homologue filtering... Fri Dec 1 09:45:42 2017 INFO : Getting structures from PDB... Fri Dec 1 09:45:45 2017 INFO : Creating modelling alignment... Fri Dec 1 09:45:45 2017 INFO : Modelling... Fri Dec 1 10:04:26 2017 INFO : Model 1 built Fri Dec 1 10:04:26 2017 INFO : Validating Calpha distances... Fri Dec 1 10:04:26 2017 INFO : Model 1 distances correct: True Fri Dec 1 10:04:26 2017 INFO : Modelling... Fri Dec 1 10:39:17 2017 INFO : Model 2 built Fri Dec 1 10:39:17 2017 INFO : Validating Calpha distances... Fri Dec 1 10:39:18 2017 INFO : Model 2 distances correct: True Fri Dec 1 10:39:18 2017 INFO : Modelling... Fri Dec 1 10:56:09 2017 INFO : Model 3 built Fri Dec 1 10:56:09 2017 INFO : Validating Calpha distances... Fri Dec 1 10:56:09 2017 INFO : Model 3 distances correct: True Fri Dec 1 10:56:09 2017 INFO : Modelling... Fri Dec 1 11:24:50 2017 INFO : Model 4 built Fri Dec 1 11:24:50 2017 INFO : Validating Calpha distances... Fri Dec 1 11:24:50 2017 INFO : Model 4 distances correct: True Fri Dec 1 11:24:50 2017 INFO : Modelling... Fri Dec 1 12:18:09 2017 INFO : Model 5 built Fri Dec 1 12:18:09 2017 INFO : Validating Calpha distances... Fri Dec 1 12:18:09 2017 INFO : Model 5 distances correct: True Fri Dec 1 12:18:31 2017 INFO : Finished modelling Fri Dec 1 12:18:31 2017 STATUS CHANGED : R -> P Fri Dec 1 12:18:31 2017 INFO : Checking topology... Fri Dec 1 12:19:00 2017 INFO : Knot matrices done... Fri Dec 1 12:19:33 2017 INFO : Some knots found! Fri Dec 1 12:19:33 2017 INFO : No lassos found... Fri Dec 1 12:19:33 2017 INFO : Finishing... Fri Dec 1 12:19:33 2017 STATUS CHANGED : P -> E Fri Dec 1 12:19:33 2017 ERROR : Error while finishing Fri Dec 1 12:19:33 2017 STATUS CHANGED : E -> F |
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