| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3D0E |
A |
Unknot |
97.22% |
33.33% |
28.57% |
0.66 |
..Target: KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQREEQEMFEDFDYIAD-W |
||||
Sun Jul 23 14:59:38 2017 JOB CREATED : b9a758af-e488-42ae-adee-169a108e464c Mon Jul 24 00:58:02 2017 STATUS CHANGED : N -> R Mon Jul 24 00:58:02 2017 INFO : JOB STARTED AT: 2017-07-24 00:58:02.289491 Mon Jul 24 00:58:02 2017 INFO : METHOD: 1 Mon Jul 24 00:58:02 2017 INFO : Precalculated profile found... Mon Jul 24 00:58:02 2017 INFO : Homologue pool found... Mon Jul 24 00:58:02 2017 INFO : Verifying structure sequences of homologues... Mon Jul 24 03:33:56 2017 INFO : Starting homologue filtering... Mon Jul 24 03:35:03 2017 INFO : Getting structures from PDB... Mon Jul 24 03:35:09 2017 INFO : Creating modelling alignment... Mon Jul 24 03:35:09 2017 INFO : Modelling... Mon Jul 24 03:38:46 2017 INFO : Model 1 built Mon Jul 24 03:38:46 2017 INFO : Validating Calpha distances... Mon Jul 24 03:38:46 2017 INFO : Model 1 distances correct: True Mon Jul 24 03:38:46 2017 INFO : Modelling... Mon Jul 24 03:42:20 2017 INFO : Model 2 built Mon Jul 24 03:42:20 2017 INFO : Validating Calpha distances... Mon Jul 24 03:42:20 2017 INFO : Model 2 distances correct: True Mon Jul 24 03:42:20 2017 INFO : Modelling... Mon Jul 24 03:46:02 2017 INFO : Model 3 built Mon Jul 24 03:46:02 2017 INFO : Validating Calpha distances... Mon Jul 24 03:46:02 2017 INFO : Model 3 distances correct: True Mon Jul 24 03:46:02 2017 INFO : Modelling... Mon Jul 24 03:49:42 2017 INFO : Model 4 built Mon Jul 24 03:49:42 2017 INFO : Validating Calpha distances... Mon Jul 24 03:49:42 2017 INFO : Model 4 distances correct: True Mon Jul 24 03:49:42 2017 INFO : Modelling... Mon Jul 24 03:53:22 2017 INFO : Model 5 built Mon Jul 24 03:53:22 2017 INFO : Validating Calpha distances... Mon Jul 24 03:53:22 2017 INFO : Model 5 distances correct: True Mon Jul 24 03:53:59 2017 INFO : Finished modelling Mon Jul 24 03:53:59 2017 STATUS CHANGED : R -> P Mon Jul 24 03:53:59 2017 INFO : Checking topology... Mon Jul 24 03:58:46 2017 INFO : Knot matrices done... Mon Jul 24 03:58:46 2017 INFO : No knots found... Mon Jul 24 03:58:46 2017 INFO : No lassos found... Mon Jul 24 03:58:46 2017 INFO : Finishing... Mon Jul 24 03:58:46 2017 INFO : Job done Mon Jul 24 03:58:46 2017 STATUS CHANGED : P -> F Mon Jul 24 03:58:46 2017 STATUS CHANGED : F -> F |
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