| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5B04 |
A |
Unknot |
25.87% |
34.38% |
9.38% |
1.27 |
..Target: LEQSFDNSSLISSVKELLLNKDLIHPSILLLTSHLAHYKIVGSIPRCIAMLEVFQIVIKDYQTPKGTTLSRNLTSYLSHQIDLLKKARPLSVTMGNAIRWLKQEI--SLIDPSTPDKAAKKDLCEKIGQFAKEKIELADQLIIDNASTQIEESTTIVTYGSSKVLTELLLHNAISLKKNI--KVIVVDSRPLFEGRKMAETLRNAGVNVMYALITSLDTIFNMDVDYVFLGAHSILSNGFLYSRAGTAMLAMSAKRRNIPVLVCCESLKFSQRVQLDSVTFNELADPNDLVNIDYENP--VERRGNKGALLNQFIKERKFEKKKLAMENKPKGNKIGGKKGSEGESKDASNEEDSNSKNILDGWQELPSLNIVNILYDLTPPEYIKKVITEFGALPPSSVPVILREYKGSA |
||||
Tue Nov 19 11:22:03 2019 JOB CREATED : bf8189a3-c48f-42e5-9a0e-3fd167ac726f Tue Nov 19 11:23:02 2019 STATUS CHANGED : N -> R Tue Nov 19 11:23:02 2019 INFO : JOB STARTED AT: 2019-11-19 11:23:02.030214 Tue Nov 19 11:23:02 2019 INFO : METHOD: 1 Tue Nov 19 11:23:02 2019 INFO : Building Profile... Tue Nov 19 11:23:02 2019 INFO : --E-value set to 0.001-- Tue Nov 19 11:40:11 2019 INFO : Homologue pool found... Tue Nov 19 11:40:11 2019 INFO : Verifying structure sequences of homologues... Tue Nov 19 11:42:20 2019 INFO : Starting homologue filtering... Tue Nov 19 11:42:45 2019 INFO : Getting structures from PDB... Tue Nov 19 11:42:49 2019 INFO : Creating modelling alignment... Tue Nov 19 11:42:49 2019 INFO : Modelling... Tue Nov 19 11:54:34 2019 INFO : Model 1 built Tue Nov 19 11:54:34 2019 INFO : Validating Calpha distances... Tue Nov 19 11:54:34 2019 INFO : Model 1 distances correct: True Tue Nov 19 11:54:34 2019 INFO : Modelling... Tue Nov 19 12:09:08 2019 INFO : Model 2 built Tue Nov 19 12:09:08 2019 INFO : 1/1 gaps will be remodelled Tue Nov 19 12:26:06 2019 INFO : Validating Calpha distances... Tue Nov 19 12:26:06 2019 INFO : Model 2 distances correct: True Tue Nov 19 12:26:06 2019 INFO : Modelling... Tue Nov 19 12:36:22 2019 INFO : Model 3 built Tue Nov 19 12:36:22 2019 INFO : Validating Calpha distances... Tue Nov 19 12:36:22 2019 INFO : Model 3 distances correct: True Tue Nov 19 12:36:22 2019 INFO : Modelling... Tue Nov 19 12:55:20 2019 INFO : Model 4 built Tue Nov 19 12:55:20 2019 INFO : 1/1 gaps will be remodelled Tue Nov 19 13:16:21 2019 INFO : Validating Calpha distances... Tue Nov 19 13:16:21 2019 INFO : Model 4 distances correct: True Tue Nov 19 13:16:21 2019 INFO : Modelling... Tue Nov 19 13:31:10 2019 INFO : Model 5 built Tue Nov 19 13:31:10 2019 INFO : 1/1 gaps will be remodelled Tue Nov 19 13:59:24 2019 INFO : Validating Calpha distances... Tue Nov 19 13:59:24 2019 INFO : Model 5 distances correct: True Tue Nov 19 13:59:48 2019 INFO : Finished modelling Tue Nov 19 13:59:48 2019 STATUS CHANGED : R -> P Tue Nov 19 13:59:49 2019 INFO : Finished edm surfaces: no map Tue Nov 19 13:59:49 2019 INFO : Checking topology... Tue Nov 19 13:59:50 2019 INFO : Knot matrices done... Tue Nov 19 13:59:50 2019 INFO : No knots found... Tue Nov 19 13:59:50 2019 INFO : No lassos found... Tue Nov 19 13:59:50 2019 INFO : Finishing... Tue Nov 19 13:59:51 2019 INFO : Job done Tue Nov 19 13:59:51 2019 STATUS CHANGED : P -> F Tue Nov 19 13:59:51 2019 STATUS CHANGED : F -> F |
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