| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 74-358 | 358-520 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 72-358 | 358-497 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 74-358 | 358-529 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 74-362 | 362-530 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 74-358 | 358-544 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3DH4 |
A |
S +31,41,+31 |
95.70% |
225.00% |
145.00% |
0.98 |
..Target: SFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVNADAEITLIIFGVMAGVIGTILLISYGIK |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:47:03 2017 JOB CREATED : bf87786f-e22e-4fb2-8318-64e27f9229df Fri Dec 1 23:36:02 2017 STATUS CHANGED : N -> R Fri Dec 1 23:36:02 2017 INFO : JOB STARTED AT: 2017-12-01 23:36:02.751848 Fri Dec 1 23:36:02 2017 INFO : METHOD: 1 Fri Dec 1 23:36:02 2017 INFO : Precalculated profile found... Fri Dec 1 23:36:02 2017 INFO : Homologue pool found... Fri Dec 1 23:36:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 23:36:15 2017 INFO : Starting homologue filtering... Fri Dec 1 23:36:28 2017 INFO : Getting structures from PDB... Fri Dec 1 23:36:37 2017 INFO : Creating modelling alignment... Fri Dec 1 23:36:37 2017 INFO : Modelling... Fri Dec 1 23:57:41 2017 INFO : Model 1 built Fri Dec 1 23:57:41 2017 INFO : 1/3 gaps will be remodelled Sat Dec 2 00:46:34 2017 INFO : Validating Calpha distances... Sat Dec 2 00:46:34 2017 INFO : Model 1 distances correct: True Sat Dec 2 00:46:34 2017 INFO : Modelling... Sat Dec 2 01:31:43 2017 INFO : Model 2 built Sat Dec 2 01:31:43 2017 INFO : 1/3 gaps will be remodelled Sat Dec 2 02:10:27 2017 INFO : Validating Calpha distances... Sat Dec 2 02:10:28 2017 INFO : Model 2 distances correct: True Sat Dec 2 02:10:28 2017 INFO : Modelling... Sat Dec 2 02:26:06 2017 INFO : Model 3 built Sat Dec 2 02:26:06 2017 INFO : 1/3 gaps will be remodelled Sat Dec 2 03:16:03 2017 INFO : Validating Calpha distances... Sat Dec 2 03:16:03 2017 INFO : Model 3 distances correct: True Sat Dec 2 03:16:03 2017 INFO : Modelling... Sat Dec 2 03:30:44 2017 INFO : Model 4 built Sat Dec 2 03:30:44 2017 INFO : 1/3 gaps will be remodelled Sat Dec 2 04:21:00 2017 INFO : Validating Calpha distances... Sat Dec 2 04:21:00 2017 INFO : Model 4 distances correct: True Sat Dec 2 04:21:00 2017 INFO : Modelling... Sat Dec 2 04:45:38 2017 INFO : Model 5 built Sat Dec 2 04:45:38 2017 INFO : Validating Calpha distances... Sat Dec 2 04:45:38 2017 INFO : Model 5 distances correct: True Sat Dec 2 04:46:54 2017 INFO : Finished modelling Sat Dec 2 04:46:54 2017 STATUS CHANGED : R -> P Sat Dec 2 04:46:54 2017 INFO : Checking topology... Sat Dec 2 06:33:24 2017 INFO : Knot matrices done... Sat Dec 2 06:36:48 2017 INFO : Some knots found! Sat Dec 2 06:36:48 2017 INFO : No lassos found... Sat Dec 2 06:36:48 2017 INFO : Finishing... Sat Dec 2 06:36:48 2017 STATUS CHANGED : P -> E Sat Dec 2 06:36:48 2017 ERROR : Error while finishing Sat Dec 2 06:36:48 2017 STATUS CHANGED : E -> F |
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