| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 52-31 | 11-224 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 29-101 | |||||
| Model 2 | Knot | K -5231 | 9-226 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 29-101 | |||||
| Model 3 | Knot | K -52-31 | 11-225 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 29-101 | |||||
| Model 4 | Knot | K -52-31 | 10-224 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 29-101 | |||||
| Model 5 | Knot | K -5231 | 9-226 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 29-101 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3RIS |
A |
K -52,-31,-31 |
51.98% |
90.91% |
54.55% |
1.06 |
..Target: PLGSXAEGNWCLIESDPGIFTEXIHGFGCTGLQVEELVVLD-ESIEHLKPIHGFIFLFRWL--KKEXRKEVDDSPQTCTDVYFSQQVIQNACASQALINLLLNCDHPDVDLGPTLKEFKDFTYDLDSASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLRAAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLXAVISD------------Q |
||||
1XD3 |
A |
K -52,-31,-31 |
27.95% |
72.73% |
0.00% |
1.20 |
..Target: PLGSXAEG-NWCLIESDPGIFTEXIHGFGC-TGLQVEELVVLDESIEHLKP--IHGFIFLFRWLKK------EXRKEVDDSPQTCT-DVYFSQQVIQNACASQALINLLL-NCDHPDVDLGPTLKEFKDFTYDLDSASRGLCLTNSEKIRAVHNSFGRQQLFEIDDQQKLDEEDVFHFVTYVPVNDGVYELDGLRAAPLRLGTVASDGDWTEVAIKAIKEKIKNYGESEVRFNLXAVISDQ |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Jul 20 21:46:26 2017 JOB CREATED : c202e923-9ca7-495a-9f6c-68d378c68a9d Thu Jul 20 21:47:01 2017 STATUS CHANGED : N -> R Thu Jul 20 21:47:01 2017 INFO : JOB STARTED AT: 2017-07-20 21:47:01.724059 Thu Jul 20 21:47:01 2017 INFO : METHOD: 1 Thu Jul 20 21:47:01 2017 INFO : Precalculated profile found... Thu Jul 20 21:47:01 2017 INFO : Homologue pool found... Thu Jul 20 21:47:01 2017 INFO : Verifying structure sequences of homologues... Thu Jul 20 21:47:45 2017 INFO : Starting homologue filtering... Thu Jul 20 21:48:11 2017 INFO : Getting structures from PDB... Thu Jul 20 21:48:15 2017 INFO : Creating modelling alignment... Thu Jul 20 21:48:15 2017 INFO : Modelling... Thu Jul 20 21:48:15 2017 STATUS CHANGED : R -> E Thu Jul 20 21:48:15 2017 ERROR : Error while modelling Fri Jul 21 07:56:02 2017 STATUS CHANGED : N -> R Fri Jul 21 07:56:02 2017 INFO : JOB STARTED AT: 2017-07-21 07:56:02.097870 Fri Jul 21 07:56:02 2017 INFO : METHOD: 1 Fri Jul 21 07:56:02 2017 INFO : Precalculated profile found... Fri Jul 21 07:56:02 2017 INFO : Homologue pool found... Fri Jul 21 07:56:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 07:56:44 2017 INFO : Starting homologue filtering... Fri Jul 21 07:57:15 2017 INFO : Getting structures from PDB... Fri Jul 21 07:57:19 2017 INFO : Creating modelling alignment... Fri Jul 21 07:57:19 2017 INFO : Modelling... Fri Jul 21 07:57:21 2017 STATUS CHANGED : R -> E Fri Jul 21 07:57:21 2017 ERROR : Error while modelling Fri Jul 21 08:27:02 2017 STATUS CHANGED : N -> R Fri Jul 21 08:27:02 2017 INFO : JOB STARTED AT: 2017-07-21 08:27:02.443724 Fri Jul 21 08:27:02 2017 INFO : METHOD: 1 Fri Jul 21 08:27:02 2017 INFO : Precalculated profile found... Fri Jul 21 08:27:02 2017 INFO : Homologue pool found... Fri Jul 21 08:27:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 08:27:44 2017 INFO : Starting homologue filtering... Fri Jul 21 08:28:13 2017 INFO : Getting structures from PDB... Fri Jul 21 08:28:17 2017 INFO : Creating modelling alignment... Fri Jul 21 08:28:17 2017 INFO : Modelling... Fri Jul 21 08:29:26 2017 INFO : Model 1 built Fri Jul 21 08:29:26 2017 INFO : Validating Calpha distances... Fri Jul 21 08:29:26 2017 INFO : Model 1 distances correct: True Fri Jul 21 08:29:26 2017 INFO : Modelling... Fri Jul 21 08:33:08 2017 INFO : Model 2 built Fri Jul 21 08:33:08 2017 INFO : Validating Calpha distances... Fri Jul 21 08:33:08 2017 INFO : Model 2 distances correct: True Fri Jul 21 08:33:08 2017 INFO : Modelling... Fri Jul 21 08:34:16 2017 INFO : Model 3 built Fri Jul 21 08:34:16 2017 INFO : Validating Calpha distances... Fri Jul 21 08:34:16 2017 INFO : Model 3 distances correct: True Fri Jul 21 08:34:16 2017 INFO : Modelling... Fri Jul 21 08:38:08 2017 INFO : Model 4 built Fri Jul 21 08:38:08 2017 INFO : Validating Calpha distances... Fri Jul 21 08:38:08 2017 INFO : Model 4 distances correct: True Fri Jul 21 08:38:08 2017 INFO : Modelling... Fri Jul 21 08:39:55 2017 INFO : Model 5 built Fri Jul 21 08:39:55 2017 INFO : Validating Calpha distances... Fri Jul 21 08:39:55 2017 INFO : Model 5 distances correct: True Fri Jul 21 08:40:09 2017 INFO : Finished modelling Fri Jul 21 08:40:09 2017 STATUS CHANGED : R -> P Fri Jul 21 08:40:09 2017 INFO : Checking topology... Fri Jul 21 08:45:35 2017 INFO : Knot matrices done... Fri Jul 21 08:46:20 2017 INFO : Some knots found! Fri Jul 21 08:46:23 2017 INFO : Some lassos found! Fri Jul 21 08:46:23 2017 INFO : Finishing... Fri Jul 21 08:46:23 2017 INFO : Job done Fri Jul 21 08:46:23 2017 STATUS CHANGED : P -> F Fri Jul 21 08:46:23 2017 STATUS CHANGED : F -> F |
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