| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L +1C | -- | -- | 23-206 | ||||
| Model 2 | Lasso | L +1C | -- | -- | 23-206 | ||||
| Model 3 | Lasso | L +1C | -- | -- | 23-206 | ||||
| Model 4 | Lasso | L +1C | -- | -- | 23-206 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3JXG |
A |
K +31 |
100.00% |
100.00% |
100.00% |
0.51 |
..Target: GDPYWAYSGAYGPEHWVTSSVSCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFILRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQALNDRVVSKS |
||||
Fri Dec 1 09:37:29 2017 JOB CREATED : c2a4a5ea-2327-44bd-8f6e-7b8978a06eeb Fri Dec 1 12:20:03 2017 STATUS CHANGED : N -> R Fri Dec 1 12:20:03 2017 INFO : JOB STARTED AT: 2017-12-01 12:20:03.130524 Fri Dec 1 12:20:03 2017 INFO : METHOD: 1 Fri Dec 1 12:20:03 2017 INFO : Precalculated profile found... Fri Dec 1 12:20:03 2017 INFO : Homologue pool found... Fri Dec 1 12:20:03 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 12:35:13 2017 INFO : Starting homologue filtering... Fri Dec 1 12:36:01 2017 INFO : Getting structures from PDB... Fri Dec 1 12:36:06 2017 INFO : Creating modelling alignment... Fri Dec 1 12:36:06 2017 INFO : Modelling... Fri Dec 1 12:39:04 2017 INFO : Model 1 built Fri Dec 1 12:39:04 2017 INFO : Validating Calpha distances... Fri Dec 1 12:39:04 2017 INFO : Model 1 distances correct: True Fri Dec 1 12:39:04 2017 INFO : Modelling... Fri Dec 1 12:41:02 2017 INFO : Model 2 built Fri Dec 1 12:41:02 2017 INFO : Validating Calpha distances... Fri Dec 1 12:41:02 2017 INFO : Model 2 distances correct: True Fri Dec 1 12:41:02 2017 INFO : Modelling... Fri Dec 1 12:42:59 2017 INFO : Model 3 built Fri Dec 1 12:42:59 2017 INFO : Validating Calpha distances... Fri Dec 1 12:42:59 2017 INFO : Model 3 distances correct: True Fri Dec 1 12:42:59 2017 INFO : Modelling... Fri Dec 1 12:44:53 2017 INFO : Model 4 built Fri Dec 1 12:44:53 2017 INFO : Validating Calpha distances... Fri Dec 1 12:44:53 2017 INFO : Model 4 distances correct: True Fri Dec 1 12:44:53 2017 INFO : Modelling... Fri Dec 1 12:45:21 2017 INFO : Model 5 creation failed - VTFM optimization failed. Possibly really bad templates were used? Fri Dec 1 12:45:49 2017 INFO : Finished modelling Fri Dec 1 12:45:49 2017 STATUS CHANGED : R -> P Fri Dec 1 12:45:49 2017 INFO : Checking topology... Fri Dec 1 12:46:40 2017 INFO : Knot matrices done... Fri Dec 1 12:47:10 2017 INFO : No knots found... Fri Dec 1 12:47:30 2017 INFO : Some lassos found! Fri Dec 1 12:47:30 2017 INFO : Finishing... Fri Dec 1 12:47:30 2017 STATUS CHANGED : P -> E Fri Dec 1 12:47:30 2017 ERROR : Error while finishing Fri Dec 1 12:47:30 2017 STATUS CHANGED : E -> F |
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