| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4W8F |
A |
Unknot |
13.31% |
100.00% |
18.18% |
0.94 |
..Target: F----QSNAMFAWWGRTVYQFRYIVIG--------VMVALC-----------------------------------------------------------------------------------------------------------------------------------------------LGGG------------VYGISLGNHVTQSGFYDEGSQSVAASLI--------GDEVYGRD-----RTSHVVAILT-----------PPDDKKVTDK-----------------------------AW--------------------QKKVTEELDQVVKDHEDQIVG--------------WVGWLK---APDTTDPTVSAMKTQD---LRHTF--ISIPLQGDDDDEILKNYQVVEPELQQVNGGDIRLAGLNPLASELTGTI---GEDQKR------------AEVAAIPLVAVVLFFVFG-------------TVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTL---------------------------------------------------------------------IGL----GIAIDYGLFIVSRFRE---------------------------EIAEGYDT-EAAVRRTVMTSGRTVVF--------------------SAVIIV-----------ASSVPLLLFPQGFLKSITYAIIASVMLAAILSITVLAAAL------------------------------------------------------------------------------------------------AILGPRVD-----------------------------------------------ALGVTTLLKIPFLANW--QFSRRIIDWF---AEKTQK----------------TKTREEVERGF-----------------------------------------------------------------WGRLVNVVMKRPIAFAAPI----------------------------------------------------------LVVMVLLI--IPLGQLSLGGISEKYL--------------------------------PPDNAVR-------------------------QSQEQFDK----LFPGFR--TEP----------------------LTLVMKREDGEPITDAQIA-------------------DMRAKALTVSGFTDPDNDPEKMW----KERPANDSGSKDPSVRVIQNGL------ENRNDAAKKIDE---------------------------LRALQPPHG--------------IEVFVGGTPALE--QDSIH-----SLFDKLPLMAL----------ILIVTTTVLMFLAFGSVVLPIKA-ALMSALTLGSTMG-ILTWMFVDGHGSGLMNYTPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERGMSTAEAIRIGTATTGRLITGAALILAVVAGAFVFSDLVMMKYLAF-------------------GLLI-------------------ALLLDATIIRMFLVPAVMKLLGDDCWWAPRWMKRVQEKEFN--IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAYEFHLGGIKAFHHHHHHHH |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | LLKIPFLANW--QFSRRIIDWF---AEKTQK----------------TKTREEVERGF-----------------------------------------------------------------WG |
|||
|---|---|---|---|---|---|---|---|---|---|
| 4W8F | A | Unknot | 18.18% | 100.00% | FNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFY |
||||
Sun Jan 13 19:40:48 2019 JOB CREATED : c3bb9098-2e56-4e6b-a263-490d0e208e32 Sun Jan 13 19:41:01 2019 STATUS CHANGED : N -> R Sun Jan 13 19:41:01 2019 INFO : JOB STARTED AT: 2019-01-13 19:41:01.684128 Sun Jan 13 19:41:01 2019 INFO : METHOD: 1 Sun Jan 13 19:41:01 2019 INFO : Building Profile... Sun Jan 13 19:41:01 2019 INFO : --E-value set to 0.001-- Sun Jan 13 20:30:56 2019 INFO : Homologue pool found... Sun Jan 13 20:30:56 2019 INFO : Verifying structure sequences of homologues... Sun Jan 13 20:59:03 2019 INFO : Starting homologue filtering... Sun Jan 13 21:00:53 2019 INFO : Getting structures from PDB... Sun Jan 13 21:01:19 2019 INFO : Creating modelling alignment... Sun Jan 13 21:01:19 2019 INFO : Modelling... Sun Jan 13 21:33:43 2019 INFO : Model 1 built Sun Jan 13 21:33:43 2019 INFO : 1/1 gaps will be remodelled Sun Jan 13 22:26:03 2019 INFO : Validating Calpha distances... Sun Jan 13 22:26:03 2019 INFO : Model 1 distances correct: True Sun Jan 13 22:26:03 2019 INFO : Modelling... Sun Jan 13 22:56:43 2019 INFO : Model 2 built Sun Jan 13 22:56:43 2019 INFO : Validating Calpha distances... Sun Jan 13 22:56:43 2019 INFO : Model 2 distances correct: True Sun Jan 13 22:56:43 2019 INFO : Modelling... Sun Jan 13 23:13:17 2019 INFO : Model 3 built Sun Jan 13 23:13:17 2019 INFO : Validating Calpha distances... Sun Jan 13 23:13:17 2019 INFO : Model 3 distances correct: True Sun Jan 13 23:13:17 2019 INFO : Modelling... Sun Jan 13 23:36:07 2019 INFO : Model 4 built Sun Jan 13 23:36:07 2019 INFO : Validating Calpha distances... Sun Jan 13 23:36:07 2019 INFO : Model 4 distances correct: True Sun Jan 13 23:36:07 2019 INFO : Modelling... Sun Jan 13 23:45:19 2019 INFO : Model 5 built Sun Jan 13 23:45:19 2019 INFO : 1/1 gaps will be remodelled Mon Jan 14 00:37:49 2019 INFO : Validating Calpha distances... Mon Jan 14 00:37:49 2019 INFO : Model 5 distances correct: True Mon Jan 14 00:38:56 2019 INFO : Finished modelling Mon Jan 14 00:38:56 2019 STATUS CHANGED : R -> P Mon Jan 14 00:38:58 2019 INFO : Finished edm surfaces: no map Mon Jan 14 00:38:58 2019 INFO : Checking topology... Mon Jan 14 00:45:21 2019 INFO : Knot matrices done... Mon Jan 14 00:45:24 2019 INFO : No knots found... Mon Jan 14 00:45:24 2019 INFO : No lassos found... Mon Jan 14 00:45:24 2019 INFO : Finishing... Mon Jan 14 00:45:25 2019 INFO : Job done Mon Jan 14 00:45:25 2019 STATUS CHANGED : P -> F Mon Jan 14 00:45:25 2019 STATUS CHANGED : F -> F |
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