| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 42-257 | -- | -- | -- | |||
| Model 2 | Knot | K 31 | 47-252 | -- | -- | -- | |||
| Model 3 | Knot | K 31 | 43-255 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3BES |
L |
Unknot |
100.00% |
83.33% |
83.33% |
0.93 |
..Target: MQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAEFSTEEQQEGPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLF |
||||
2RIG |
A |
Unknot |
63.03% |
33.33% |
8.33% |
1.58 |
..Target: MQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAEFSTEEQQEGPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQML-F |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 |
Fri Dec 1 09:43:43 2017 JOB CREATED : c4933017-2a8f-4d67-962b-e9c9f7353bb5 Fri Dec 1 20:03:02 2017 STATUS CHANGED : N -> R Fri Dec 1 20:03:02 2017 INFO : JOB STARTED AT: 2017-12-01 20:03:02.658883 Fri Dec 1 20:03:02 2017 INFO : METHOD: 1 Fri Dec 1 20:03:02 2017 INFO : Precalculated profile found... Fri Dec 1 20:03:02 2017 INFO : Homologue pool found... Fri Dec 1 20:03:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 20:03:27 2017 INFO : Starting homologue filtering... Fri Dec 1 20:03:52 2017 INFO : Getting structures from PDB... Fri Dec 1 20:03:56 2017 INFO : Creating modelling alignment... Fri Dec 1 20:03:56 2017 INFO : Modelling... Fri Dec 1 20:13:04 2017 INFO : Model 1 built Fri Dec 1 20:13:04 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 20:24:07 2017 INFO : Validating Calpha distances... Fri Dec 1 20:24:07 2017 INFO : Model 1 distances correct: False Fri Dec 1 20:24:07 2017 INFO : Modelling... Fri Dec 1 20:30:56 2017 INFO : Model 2 built Fri Dec 1 20:30:56 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 20:38:08 2017 INFO : Validating Calpha distances... Fri Dec 1 20:38:08 2017 INFO : Model 2 distances correct: True Fri Dec 1 20:38:08 2017 INFO : Modelling... Fri Dec 1 20:45:41 2017 INFO : Model 3 built Fri Dec 1 20:45:41 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 20:59:20 2017 INFO : Validating Calpha distances... Fri Dec 1 20:59:20 2017 INFO : Model 3 distances correct: True Fri Dec 1 20:59:20 2017 INFO : Modelling... Fri Dec 1 21:07:33 2017 INFO : Model 4 built Fri Dec 1 21:07:33 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 21:16:48 2017 INFO : Validating Calpha distances... Fri Dec 1 21:16:48 2017 INFO : Model 4 distances correct: True Fri Dec 1 21:16:48 2017 INFO : Modelling... Fri Dec 1 21:25:30 2017 INFO : Model 5 built Fri Dec 1 21:25:30 2017 INFO : 1/1 gaps will be remodelled Fri Dec 1 21:34:43 2017 INFO : Validating Calpha distances... Fri Dec 1 21:34:43 2017 INFO : Model 5 distances correct: False Fri Dec 1 21:35:06 2017 INFO : Finished modelling Fri Dec 1 21:35:06 2017 STATUS CHANGED : R -> P Fri Dec 1 21:35:06 2017 INFO : Checking topology... Fri Dec 1 21:36:05 2017 INFO : Knot matrices done... Fri Dec 1 21:36:42 2017 INFO : Some knots found! Fri Dec 1 21:36:42 2017 INFO : No lassos found... Fri Dec 1 21:36:42 2017 INFO : Finishing... Fri Dec 1 21:36:42 2017 STATUS CHANGED : P -> E Fri Dec 1 21:36:42 2017 ERROR : Error while finishing Fri Dec 1 21:36:42 2017 STATUS CHANGED : E -> F |
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