| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 9-284 | -- | -- | -- | |||
| Model 2 | Knot | K 31 | 8-352 | -- | -- | -- | |||
| Model 3 | Knot | K 31 | 8-375 | -- | -- | -- | |||
| Model 4 | Knot | K 31 | 8-375 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1FUG |
A |
K +31 |
43.08% |
100.00% |
75.00% |
1.13 |
..Target: -MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFVAGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPD------EVDVMVFLNEQSPDINQGVDQEDG-ETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKANPHE-LGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLILDSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSSKDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVNDDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALEQFK--KLLK |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 |
Fri Dec 1 09:52:22 2017 JOB CREATED : c7880e6b-cd67-4dba-8917-2e4ce43bae44 Sat Dec 2 06:11:01 2017 STATUS CHANGED : N -> R Sat Dec 2 06:11:01 2017 INFO : JOB STARTED AT: 2017-12-02 06:11:01.883161 Sat Dec 2 06:11:01 2017 INFO : METHOD: 1 Sat Dec 2 06:11:02 2017 INFO : Building Profile... Sat Dec 2 06:11:02 2017 INFO : --E-value set to 0.001-- Sat Dec 2 06:25:05 2017 INFO : Homologue pool found... Sat Dec 2 06:25:05 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 06:28:08 2017 INFO : Starting homologue filtering... Sat Dec 2 06:29:04 2017 INFO : Getting structures from PDB... Sat Dec 2 06:29:11 2017 INFO : Creating modelling alignment... Sat Dec 2 06:29:11 2017 INFO : Modelling... Sat Dec 2 06:32:42 2017 INFO : Model 1 built Sat Dec 2 06:32:42 2017 INFO : Validating Calpha distances... Sat Dec 2 06:32:42 2017 INFO : Model 1 distances correct: True Sat Dec 2 06:32:42 2017 INFO : Modelling... Sat Dec 2 06:39:55 2017 INFO : Model 2 built Sat Dec 2 06:39:55 2017 INFO : 1/1 gaps will be remodelled Sat Dec 2 07:05:44 2017 INFO : Validating Calpha distances... Sat Dec 2 07:05:44 2017 INFO : Model 2 distances correct: False Sat Dec 2 07:05:44 2017 INFO : Modelling... Sat Dec 2 07:09:11 2017 INFO : Model 3 built Sat Dec 2 07:09:11 2017 INFO : Validating Calpha distances... Sat Dec 2 07:09:11 2017 INFO : Model 3 distances correct: True Sat Dec 2 07:09:11 2017 INFO : Modelling... Sat Dec 2 07:12:38 2017 INFO : Model 4 built Sat Dec 2 07:12:38 2017 INFO : Validating Calpha distances... Sat Dec 2 07:12:38 2017 INFO : Model 4 distances correct: True Sat Dec 2 07:12:38 2017 INFO : Modelling... Sat Dec 2 07:16:07 2017 INFO : Model 5 built Sat Dec 2 07:16:07 2017 INFO : Validating Calpha distances... Sat Dec 2 07:16:07 2017 INFO : Model 5 distances correct: True Sat Dec 2 07:16:44 2017 INFO : Finished modelling Sat Dec 2 07:16:44 2017 STATUS CHANGED : R -> P Sat Dec 2 07:16:44 2017 INFO : Checking topology... Sat Dec 2 07:19:05 2017 INFO : Knot matrices done... Sat Dec 2 07:20:23 2017 INFO : Some knots found! Sat Dec 2 07:20:23 2017 INFO : No lassos found... Sat Dec 2 07:20:23 2017 INFO : Finishing... Sat Dec 2 07:20:23 2017 STATUS CHANGED : P -> E Sat Dec 2 07:20:23 2017 ERROR : Error while finishing Sat Dec 2 07:20:23 2017 STATUS CHANGED : E -> F |
GapRepairer