| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 5231 | 5-181 | 181-218 | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-95 | |||||
| Model 2 | Knot | K 5231 | 4-180 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-95 | |||||
| Model 3 | Knot | K 5231 | 5-180 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-95 | |||||
| Model 4 | Knot | K 5231 | 4-181 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-95 | |||||
| Model 5 | Knot | K 5231 | 4-181 | -- | -- | -- | |||
| Lasso | SL 2--C | -- | -- | 22-95 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3RIS |
A |
K -52,-31,-31 |
92.51% |
72.73% |
63.64% |
0.66 |
..Target: GEWCLXESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQQXFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLXAIVSDR------------ |
||||
3RII |
B |
K -52,-31,-31 |
100.00% |
45.45% |
45.45% |
0.59 |
..Target: GEWCLXESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQQXFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLXAIVSDR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:50:18 2017 JOB CREATED : c8e2bd3d-4fbd-48d2-89ba-7018bd08ef1f Sat Dec 2 03:52:03 2017 STATUS CHANGED : N -> R Sat Dec 2 03:52:03 2017 INFO : JOB STARTED AT: 2017-12-02 03:52:03.040772 Sat Dec 2 03:52:03 2017 INFO : METHOD: 1 Sat Dec 2 03:52:03 2017 INFO : Precalculated profile found... Sat Dec 2 03:52:03 2017 INFO : Homologue pool found... Sat Dec 2 03:52:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 03:53:07 2017 INFO : Starting homologue filtering... Sat Dec 2 03:54:03 2017 INFO : Getting structures from PDB... Sat Dec 2 03:54:11 2017 INFO : Creating modelling alignment... Sat Dec 2 03:54:11 2017 INFO : Modelling... Sat Dec 2 03:56:43 2017 INFO : Model 1 built Sat Dec 2 03:56:43 2017 INFO : Validating Calpha distances... Sat Dec 2 03:56:43 2017 INFO : Model 1 distances correct: True Sat Dec 2 03:56:43 2017 INFO : Modelling... Sat Dec 2 03:59:14 2017 INFO : Model 2 built Sat Dec 2 03:59:14 2017 INFO : Validating Calpha distances... Sat Dec 2 03:59:14 2017 INFO : Model 2 distances correct: True Sat Dec 2 03:59:14 2017 INFO : Modelling... Sat Dec 2 04:01:41 2017 INFO : Model 3 built Sat Dec 2 04:01:41 2017 INFO : Validating Calpha distances... Sat Dec 2 04:01:41 2017 INFO : Model 3 distances correct: True Sat Dec 2 04:01:41 2017 INFO : Modelling... Sat Dec 2 04:04:07 2017 INFO : Model 4 built Sat Dec 2 04:04:07 2017 INFO : Validating Calpha distances... Sat Dec 2 04:04:07 2017 INFO : Model 4 distances correct: True Sat Dec 2 04:04:07 2017 INFO : Modelling... Sat Dec 2 04:06:35 2017 INFO : Model 5 built Sat Dec 2 04:06:35 2017 INFO : Validating Calpha distances... Sat Dec 2 04:06:35 2017 INFO : Model 5 distances correct: True Sat Dec 2 04:07:01 2017 INFO : Finished modelling Sat Dec 2 04:07:01 2017 STATUS CHANGED : R -> P Sat Dec 2 04:07:01 2017 INFO : Checking topology... Sat Dec 2 04:07:51 2017 INFO : Knot matrices done... Sat Dec 2 04:09:02 2017 INFO : Some knots found! Sat Dec 2 04:09:08 2017 INFO : Some lassos found! Sat Dec 2 04:09:08 2017 INFO : Finishing... Sat Dec 2 04:09:08 2017 STATUS CHANGED : P -> E Sat Dec 2 04:09:08 2017 ERROR : Error while finishing Sat Dec 2 04:09:08 2017 STATUS CHANGED : E -> F |
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