| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 16-245 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 11-193 | |||||
| Model 2 | Knot | K 31 | 16-245 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 11-193 | |||||
| Model 3 | Knot | K 31 | 16-245 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 11-193 | |||||
| Model 4 | Knot | K 31 | 16-245 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 11-193 | |||||
| Model 5 | Knot | K 31 | 16-245 | -- | -- | -- | |||
| Lasso | SL 2++C | -- | -- | 11-193 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3FE4 |
B |
K +31 |
99.59% |
40.00% |
40.00% |
0.29 |
..Target: EAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPMVNNGHTVQISLPSTMRMTVADGTVYIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNSKYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKYPGQRTTLTGLDVQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLLDHRNKTIHNDYRRTQPLNHRVVESNFP- |
||||
4LU3 |
A |
K +31 |
38.35% |
80.00% |
20.00% |
1.17 |
..Target: ---------EAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPM--VNNGHTVQISLPSTMRMTVADGTV--YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNS-KYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKYPGQRTTLTGLDVQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLL---DHRNKTIHNDYRRTQPLNHRVV-------ESNFP |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:48:29 2017 JOB CREATED : ccbd6c7d-50c2-45b6-9bbf-9d793d5f774c Sat Dec 2 01:43:01 2017 STATUS CHANGED : N -> R Sat Dec 2 01:43:01 2017 INFO : JOB STARTED AT: 2017-12-02 01:43:01.874502 Sat Dec 2 01:43:01 2017 INFO : METHOD: 1 Sat Dec 2 01:43:02 2017 INFO : Precalculated profile found... Sat Dec 2 01:43:02 2017 INFO : Homologue pool found... Sat Dec 2 01:43:02 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 02:00:58 2017 INFO : Starting homologue filtering... Sat Dec 2 02:01:50 2017 INFO : Getting structures from PDB... Sat Dec 2 02:01:58 2017 INFO : Creating modelling alignment... Sat Dec 2 02:01:58 2017 INFO : Modelling... Sat Dec 2 02:08:49 2017 INFO : Model 1 built Sat Dec 2 02:08:49 2017 INFO : Validating Calpha distances... Sat Dec 2 02:08:49 2017 INFO : Model 1 distances correct: True Sat Dec 2 02:08:49 2017 INFO : Modelling... Sat Dec 2 02:15:21 2017 INFO : Model 2 built Sat Dec 2 02:15:21 2017 INFO : Validating Calpha distances... Sat Dec 2 02:15:21 2017 INFO : Model 2 distances correct: True Sat Dec 2 02:15:21 2017 INFO : Modelling... Sat Dec 2 02:21:47 2017 INFO : Model 3 built Sat Dec 2 02:21:47 2017 INFO : Validating Calpha distances... Sat Dec 2 02:21:47 2017 INFO : Model 3 distances correct: True Sat Dec 2 02:21:47 2017 INFO : Modelling... Sat Dec 2 02:32:39 2017 INFO : Model 4 built Sat Dec 2 02:32:39 2017 INFO : Validating Calpha distances... Sat Dec 2 02:32:39 2017 INFO : Model 4 distances correct: True Sat Dec 2 02:32:39 2017 INFO : Modelling... Sat Dec 2 02:43:20 2017 INFO : Model 5 built Sat Dec 2 02:43:20 2017 INFO : Validating Calpha distances... Sat Dec 2 02:43:20 2017 INFO : Model 5 distances correct: True Sat Dec 2 02:43:55 2017 INFO : Finished modelling Sat Dec 2 02:43:55 2017 STATUS CHANGED : R -> P Sat Dec 2 02:43:55 2017 INFO : Checking topology... Sat Dec 2 02:44:53 2017 INFO : Knot matrices done... Sat Dec 2 02:46:12 2017 INFO : Some knots found! Sat Dec 2 02:46:36 2017 INFO : Some lassos found! Sat Dec 2 02:46:36 2017 INFO : Finishing... Sat Dec 2 02:46:36 2017 STATUS CHANGED : P -> E Sat Dec 2 02:46:36 2017 ERROR : Error while finishing Sat Dec 2 02:46:36 2017 STATUS CHANGED : E -> F |
GapRepairer