| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K -31 | 96-229 | -- | -- | -- | |||
| Lasso | L -1N | -- | -- | 257-304 | -238 | ||||
| Model 2 | Knot | K -31 | 96-230 | -- | -- | -- | |||
| Lasso | L -1N | -- | -- | 257-304 | -238 | ||||
| Model 3 | Knot | K -31 | 96-229 | -- | -- | -- | |||
| Lasso | L -1N | -- | -- | 257-304 | -238 | ||||
| Model 4 | Lasso | L -1N | -- | -- | 257-304 | -238 | |||
| Model 5 | Knot | K -31 | 96-229 | -- | -- | -- | |||
| Lasso | L -1N | -- | -- | 257-304 | -238 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3TNX |
A |
Unknot |
99.68% |
200.00% |
180.00% |
0.60 |
..Target: IVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSFAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_5 |
Sun Jul 23 14:59:18 2017 JOB CREATED : ce69ff14-e0ea-436d-bbba-df17719bc604 Sun Jul 23 22:47:02 2017 STATUS CHANGED : N -> R Sun Jul 23 22:47:02 2017 INFO : JOB STARTED AT: 2017-07-23 22:47:02.818354 Sun Jul 23 22:47:02 2017 INFO : METHOD: 1 Sun Jul 23 22:47:02 2017 INFO : Precalculated profile found... Sun Jul 23 22:47:02 2017 INFO : Homologue pool found... Sun Jul 23 22:47:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 22:56:55 2017 INFO : Starting homologue filtering... Sun Jul 23 22:57:43 2017 INFO : Getting structures from PDB... Sun Jul 23 22:57:46 2017 INFO : Creating modelling alignment... Sun Jul 23 22:57:46 2017 INFO : Modelling... Sun Jul 23 23:10:44 2017 INFO : Model 1 built Sun Jul 23 23:10:44 2017 INFO : 1 gaps will be remodelled Sun Jul 23 23:20:54 2017 INFO : Validating Calpha distances... Sun Jul 23 23:20:54 2017 INFO : Model 1 distances correct: True Sun Jul 23 23:20:54 2017 INFO : Modelling... Sun Jul 23 23:27:27 2017 INFO : Model 2 built Sun Jul 23 23:27:27 2017 INFO : 1 gaps will be remodelled Sun Jul 23 23:37:52 2017 INFO : Validating Calpha distances... Sun Jul 23 23:37:52 2017 INFO : Model 2 distances correct: True Sun Jul 23 23:37:52 2017 INFO : Modelling... Sun Jul 23 23:40:56 2017 INFO : Model 3 built Sun Jul 23 23:40:56 2017 INFO : 1 gaps will be remodelled Sun Jul 23 23:49:47 2017 INFO : Validating Calpha distances... Sun Jul 23 23:49:47 2017 INFO : Model 3 distances correct: True Sun Jul 23 23:49:47 2017 INFO : Modelling... Sun Jul 23 23:58:03 2017 INFO : Model 4 built Sun Jul 23 23:58:03 2017 INFO : Validating Calpha distances... Sun Jul 23 23:58:03 2017 INFO : Model 4 distances correct: True Sun Jul 23 23:58:03 2017 INFO : Modelling... Mon Jul 24 00:06:09 2017 INFO : Model 5 built Mon Jul 24 00:06:09 2017 INFO : 1 gaps will be remodelled Mon Jul 24 00:13:45 2017 INFO : Validating Calpha distances... Mon Jul 24 00:13:45 2017 INFO : Model 5 distances correct: True Mon Jul 24 00:14:16 2017 INFO : Finished modelling Mon Jul 24 00:14:16 2017 STATUS CHANGED : R -> P Mon Jul 24 00:14:16 2017 INFO : Checking topology... Mon Jul 24 00:21:58 2017 INFO : Knot matrices done... Mon Jul 24 00:24:00 2017 INFO : Some knots found! Mon Jul 24 00:24:02 2017 INFO : Some lassos found! Mon Jul 24 00:24:02 2017 INFO : Finishing... Mon Jul 24 00:24:02 2017 INFO : Job done Mon Jul 24 00:24:02 2017 STATUS CHANGED : P -> F Mon Jul 24 00:24:02 2017 STATUS CHANGED : F -> F |
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