| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4LLD |
A |
Unknot |
98.99% |
100.00% |
100.00% |
0.75 |
..Target: VQLVQSGAEVKKPGSSVKVSCKTSGDTFSTYAISWVRQAPGQGLEWMGGIIPIFGKAHYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYFCARKFHFVSGSPFGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP- |
||||
Thu Feb 27 01:08:03 2020 JOB CREATED : d7090464-02ef-4650-8d99-ae9455b03f96 Thu Feb 27 01:09:02 2020 STATUS CHANGED : N -> R Thu Feb 27 01:09:02 2020 INFO : JOB STARTED AT: 2020-02-27 01:09:02.306973 Thu Feb 27 01:09:02 2020 INFO : METHOD: 1 Thu Feb 27 01:09:02 2020 INFO : Building Profile... Thu Feb 27 01:09:02 2020 INFO : --E-value set to 1.0-- Thu Feb 27 01:23:48 2020 INFO : Homologue pool found... Thu Feb 27 01:23:48 2020 INFO : Verifying structure sequences of homologues... Thu Feb 27 06:45:45 2020 INFO : Starting homologue filtering... Thu Feb 27 06:46:08 2020 INFO : Getting structures from PDB... Thu Feb 27 06:46:10 2020 INFO : Creating modelling alignment... Thu Feb 27 06:46:10 2020 INFO : Modelling... Thu Feb 27 06:47:01 2020 INFO : Model 1 built Thu Feb 27 06:47:01 2020 INFO : Validating Calpha distances... Thu Feb 27 06:47:01 2020 INFO : Model 1 distances correct: True Thu Feb 27 06:47:01 2020 INFO : Modelling... Thu Feb 27 06:47:48 2020 INFO : Model 2 built Thu Feb 27 06:47:48 2020 INFO : Validating Calpha distances... Thu Feb 27 06:47:48 2020 INFO : Model 2 distances correct: True Thu Feb 27 06:47:48 2020 INFO : Modelling... Thu Feb 27 06:48:37 2020 INFO : Model 3 built Thu Feb 27 06:48:37 2020 INFO : Validating Calpha distances... Thu Feb 27 06:48:37 2020 INFO : Model 3 distances correct: True Thu Feb 27 06:48:37 2020 INFO : Modelling... Thu Feb 27 06:49:24 2020 INFO : Model 4 built Thu Feb 27 06:49:24 2020 INFO : Validating Calpha distances... Thu Feb 27 06:49:24 2020 INFO : Model 4 distances correct: True Thu Feb 27 06:49:24 2020 INFO : Modelling... Thu Feb 27 06:50:10 2020 INFO : Model 5 built Thu Feb 27 06:50:10 2020 INFO : Validating Calpha distances... Thu Feb 27 06:50:10 2020 INFO : Model 5 distances correct: True Thu Feb 27 06:50:24 2020 INFO : Finished modelling Thu Feb 27 06:50:24 2020 STATUS CHANGED : R -> P Thu Feb 27 06:50:31 2020 INFO : Finished edm surfaces: success Thu Feb 27 06:50:31 2020 INFO : Checking topology... Thu Feb 27 06:50:54 2020 INFO : Knot matrices done... Thu Feb 27 06:50:54 2020 INFO : No knots found... Thu Feb 27 06:50:55 2020 INFO : No lassos found... Thu Feb 27 06:50:55 2020 INFO : Finishing... Thu Feb 27 06:50:55 2020 INFO : Job done Thu Feb 27 06:50:55 2020 STATUS CHANGED : P -> F Thu Feb 27 06:50:55 2020 STATUS CHANGED : F -> F |
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