| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 198-377 | 377-411 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 198-377 | 377-411 | -- | -- | |||
| Model 3 | Slipknot | S 31 | 198-377 | 377-411 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 198-377 | 377-411 | -- | -- | |||
| Model 5 | Slipknot | S 31 | 198-377 | 377-412 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5A1S |
A |
Unknot |
100.00% |
100.00% |
100.00% |
0.79 |
..Target: SDLLRFKIFGMPLPLYAFALITLLLSHFYNAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMVLE |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Wed Sep 11 15:20:13 2019 JOB CREATED : d782c111-c99d-4c7a-895c-1bc7b2e85cab Wed Sep 11 15:21:01 2019 STATUS CHANGED : N -> R Wed Sep 11 15:21:01 2019 INFO : JOB STARTED AT: 2019-09-11 15:21:01.454467 Wed Sep 11 15:21:01 2019 INFO : METHOD: 1 Wed Sep 11 15:21:01 2019 INFO : Building Profile... Wed Sep 11 15:21:01 2019 INFO : --E-value set to 0.001-- Wed Sep 11 15:31:21 2019 INFO : Homologue pool found... Wed Sep 11 15:31:21 2019 INFO : Verifying structure sequences of homologues... Wed Sep 11 15:31:26 2019 INFO : Starting homologue filtering... Wed Sep 11 15:31:31 2019 INFO : Getting structures from PDB... Wed Sep 11 15:31:36 2019 INFO : Creating modelling alignment... Wed Sep 11 15:31:36 2019 INFO : Modelling... Wed Sep 11 15:33:19 2019 INFO : Model 1 built Wed Sep 11 15:33:19 2019 INFO : Validating Calpha distances... Wed Sep 11 15:33:19 2019 INFO : Model 1 distances correct: True Wed Sep 11 15:33:19 2019 INFO : Modelling... Wed Sep 11 15:35:03 2019 INFO : Model 2 built Wed Sep 11 15:35:03 2019 INFO : Validating Calpha distances... Wed Sep 11 15:35:03 2019 INFO : Model 2 distances correct: True Wed Sep 11 15:35:03 2019 INFO : Modelling... Wed Sep 11 15:36:44 2019 INFO : Model 3 built Wed Sep 11 15:36:44 2019 INFO : Validating Calpha distances... Wed Sep 11 15:36:44 2019 INFO : Model 3 distances correct: True Wed Sep 11 15:36:44 2019 INFO : Modelling... Wed Sep 11 15:38:28 2019 INFO : Model 4 built Wed Sep 11 15:38:28 2019 INFO : Validating Calpha distances... Wed Sep 11 15:38:28 2019 INFO : Model 4 distances correct: True Wed Sep 11 15:38:28 2019 INFO : Modelling... Wed Sep 11 15:40:11 2019 INFO : Model 5 built Wed Sep 11 15:40:11 2019 INFO : Validating Calpha distances... Wed Sep 11 15:40:11 2019 INFO : Model 5 distances correct: True Wed Sep 11 15:40:43 2019 INFO : Finished modelling Wed Sep 11 15:40:43 2019 STATUS CHANGED : R -> P Wed Sep 11 15:41:07 2019 INFO : Finished edm surfaces: success Wed Sep 11 15:41:07 2019 INFO : Checking topology... Wed Sep 11 15:45:21 2019 INFO : Knot matrices done... Wed Sep 11 15:46:46 2019 INFO : Some knots found! Wed Sep 11 15:46:46 2019 INFO : No lassos found... Wed Sep 11 15:46:46 2019 INFO : Finishing... Wed Sep 11 15:46:47 2019 INFO : Job done Wed Sep 11 15:46:47 2019 STATUS CHANGED : P -> F Wed Sep 11 15:46:47 2019 STATUS CHANGED : F -> F |
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