| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2CHX |
A |
Unknot |
98.70% |
527.26% |
527.26% |
1.01 |
..Target: SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIKIHRSTTSQTIKVSPDDTPGAILQSFFTKMAKKKSLMDIPESQSEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKAPALSSKASAESPSSESKGKVRLLYYVNLLLIDHRFLLRRGEYVLHMWQISGKGEDQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQ---------F |
||||
3APF |
A |
Unknot |
98.69% |
526.62% |
526.62% |
1.01 |
..Target: SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIKIHRSTTSQTIKVSPDDTPGAILQSFFTKMAKKKSLMDIPESQSEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKAPALSSKASAESPSSESKGKVRLLYYVNLLLIDHRFLLRRGEYVLHMWQISGKGEDQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQ--------F |
||||
3CSF |
A |
Unknot |
99.17% |
484.41% |
484.41% |
1.02 |
..Target: SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIKIHRSTTSQTIKVSPDDTPGAILQSFFTKMAKKKSLMDIPESQSEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKAPALSSKASAESPSSESKGKVRLLYYVNLLLIDHRFLLRRGEYVLHMWQISGKGEDQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQ----F |
||||
4ANV |
A |
Unknot |
98.94% |
475.68% |
465.68% |
0.98 |
..Target: SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIKIHRSTTSQTIKVSPDDTPGAILQSFFTKMAKKKSLMDIPESQSEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKAPALSSKASAESPSSESKGKVRLLYYVNLLLIDHRFLLRRGEYVLHMWQISGKGEDQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQ-----F |
||||
4FAD |
A |
Unknot |
98.57% |
402.99% |
402.99% |
0.90 |
..Target: SEESQAFQRQLTALIGYDVTDVSNVHDDELEFTRRGLVTPRMAEVASRDPKLYAMHPWVTSKPLPEYLWKKIANNCIFIKIHRSTTSQTIKVSPDDTPGAILQSFFTKMAKKKSLMDIPESQSEQDFVLRVCGRDEYLVGETPIKNFQWVRHCLKNGEEIHVVLDTPPDPALDEVRKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWDCDRKFRVKIRGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGKAPALSSKASAESPSSESKGKVRLLYYVNLLLIDHRFLLRRGEYVLHMWQISGKGEDQGSFNADKLTSATNPDKENSMSISILLDNYCHPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLNHWLKEKSPTEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSPHFQKFQDICVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKNEEDAKKYFLDQIEVCRDKGWTVQ---------F |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | HPIALPKHQPTPDPEGDRVRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 83.87% | 83.87% | HPIA---------------RAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
||||
| 3APF | A | Unknot | 79.57% | 79.57% | ----------------------MPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
||||
| 3CSF | A | Unknot | 88.17% | 88.17% | HPIALPK-----------VRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
||||
| 4ANV | A | Unknot | 89.25% | 89.25% | HPIALPKHQ----------RAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
||||
| 4FAD | A | Unknot | 86.02% | 86.02% | --IALP-------------RAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKHPKAYPKLFSSVKWGQQEIVAKTYQLLARREVWDQSALD |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | RKEEWPLADDCTGVTGYHEQLTIHGKDHESVFTVSLWD |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 6.25% | 6.25% | RKEEW--------------------------------- |
||||
| 3APF | A | Unknot | 0.00% | 0.00% | RKE----------------------------------- |
||||
| 3CSF | A | Unknot | 0.00% | 0.00% | RKE----------------------------------- |
||||
| 4ANV | A | Unknot | 12.50% | 12.50% | RKEE----------------------------TVSLWD |
||||
| 4FAD | A | Unknot | 6.25% | 6.25% | RKEE------------------------------SLWD |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | IYCGKAPALSSKASAESPSSESKGKVRL |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 0.00% | 0.00% | IYC-----------------------RL |
||||
| 3APF | A | Unknot | 4.55% | 4.55% | IYCG---------------------VQL |
||||
| 3CSF | A | Unknot | 9.09% | 9.09% | IYCGK---------------------QL |
||||
| 4ANV | A | Unknot | 0.00% | 0.00% | IYC-----------------------QL |
||||
| 4FAD | A | Unknot | 0.00% | 0.00% | IYC----------------------VQL |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | FGHILGNYKSFLGINKERVP |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 7.14% | 7.14% | FGH-------------ERVP |
||||
| 3APF | A | Unknot | 50.00% | 50.00% | FGHILGN-------NKERVP |
||||
| 3CSF | A | Unknot | 21.43% | 21.43% | FGH--------LG---ERVP |
||||
| 4ANV | A | Unknot | 21.43% | 21.43% | FGHI-----------KERVP |
||||
| 4FAD | A | Unknot | 35.71% | 35.71% | FGHILGNY----------VP |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | QISGKGEDQGSFNADK |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 30.00% | 30.00% | QISG-------FNADK |
||||
| 3APF | A | Unknot | 30.00% | 30.00% | QISG-------FNADK |
||||
| 3CSF | A | Unknot | 20.00% | 20.00% | QIS--------FNADK |
||||
| 4ANV | A | Unknot | 30.00% | 30.00% | QISG-------FNADK |
||||
| 4FAD | A | Unknot | 30.00% | 30.00% | QISG-------FNADK |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | LMTGMPQLTSKEDIEY |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 100.00% | 100.00% | LMTGMPQLTSKEDIEY |
||||
| 3APF | A | Unknot | 100.00% | 100.00% | LMTGMPQLTSKEDIEY |
||||
| 3CSF | A | Unknot | 100.00% | 100.00% | LMTGMPQLTSKEDIEY |
||||
| 4ANV | A | Unknot | 90.00% | 100.00% | LMTGMPELTSKEDIEY |
||||
| 4FAD | A | Unknot | 100.00% | 100.00% | LMTGMPQLTSKEDIEY |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | SLSAEKYDVSSQVI |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 100.00% | 100.00% | SLSAEKYDVSSQVI |
||||
| 3APF | A | Unknot | 62.50% | 62.50% | SLSA---DVSSQVI |
||||
| 3CSF | A | Unknot | 100.00% | 100.00% | SLSAEKYDVSSQVI |
||||
| 4ANV | A | Unknot | 62.50% | 62.50% | SLSAE---VSSQVI |
||||
| 4FAD | A | Unknot | 25.00% | 25.00% | SLS------SSQVI |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | QSTVGNTGAFKDE |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2CHX | A | Unknot | 100.00% | 100.00% | QSTVGNTGAFKDE |
||||
| 3APF | A | Unknot | 100.00% | 100.00% | QSTVGNTGAFKDE |
||||
| 3CSF | A | Unknot | 85.71% | 85.71% | QSTVGNTG-FKDE |
||||
| 4ANV | A | Unknot | 100.00% | 100.00% | QSTVGNTGAFKDE |
||||
| 4FAD | A | Unknot | 100.00% | 100.00% | QSTVGNTGAFKDE |
||||
Sun Jul 23 14:56:05 2017 JOB CREATED : db727deb-7079-44c5-be3c-0d6474e92f65 Sun Jul 23 17:02:02 2017 STATUS CHANGED : N -> R Sun Jul 23 17:02:02 2017 INFO : JOB STARTED AT: 2017-07-23 17:02:02.081133 Sun Jul 23 17:02:02 2017 INFO : METHOD: 1 Sun Jul 23 17:02:02 2017 INFO : Precalculated profile found... Sun Jul 23 17:02:02 2017 INFO : Homologue pool found... Sun Jul 23 17:02:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 17:07:29 2017 INFO : Starting homologue filtering... Sun Jul 23 17:09:27 2017 INFO : Getting structures from PDB... Sun Jul 23 17:11:15 2017 INFO : Creating modelling alignment... Sun Jul 23 17:11:15 2017 INFO : Modelling... Sun Jul 23 19:49:45 2017 INFO : Model 1 built Sun Jul 23 19:49:45 2017 INFO : Validating Calpha distances... Sun Jul 23 19:49:45 2017 INFO : Model 1 distances correct: True Sun Jul 23 19:49:45 2017 INFO : Modelling... Sun Jul 23 22:45:46 2017 INFO : Model 2 built Sun Jul 23 22:45:46 2017 INFO : Validating Calpha distances... Sun Jul 23 22:45:46 2017 INFO : Model 2 distances correct: True Sun Jul 23 22:45:46 2017 INFO : Modelling... Mon Jul 24 00:39:04 2017 INFO : Model 3 built Mon Jul 24 00:39:04 2017 INFO : Validating Calpha distances... Mon Jul 24 00:39:04 2017 INFO : Model 3 distances correct: True Mon Jul 24 00:39:04 2017 INFO : Modelling... Mon Jul 24 03:03:27 2017 INFO : Model 4 built Mon Jul 24 03:03:27 2017 INFO : Validating Calpha distances... Mon Jul 24 03:03:27 2017 INFO : Model 4 distances correct: True Mon Jul 24 03:03:27 2017 INFO : Modelling... Mon Jul 24 05:51:44 2017 INFO : Model 5 built Mon Jul 24 05:51:44 2017 INFO : Validating Calpha distances... Mon Jul 24 05:51:44 2017 INFO : Model 5 distances correct: True Mon Jul 24 05:53:11 2017 INFO : Finished modelling Mon Jul 24 05:53:11 2017 STATUS CHANGED : R -> P Mon Jul 24 05:53:11 2017 INFO : Checking topology... Mon Jul 24 07:20:31 2017 INFO : Knot matrices done... Mon Jul 24 07:20:35 2017 INFO : No knots found... Mon Jul 24 07:20:40 2017 INFO : No lassos found... Mon Jul 24 07:20:40 2017 INFO : Finishing... Mon Jul 24 07:20:41 2017 INFO : Job done Mon Jul 24 07:20:41 2017 STATUS CHANGED : P -> F Mon Jul 24 07:20:41 2017 STATUS CHANGED : F -> F |
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