| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L +1C | -- | -- | 35-100 | ||||
| Model 2 | Lasso | L +1C | -- | -- | 35-100 | ||||
| Model 3 | Lasso | L +1C | -- | -- | 35-100 | ||||
| Model 4 | Lasso | L +1C | -- | -- | 35-100 | ||||
| Model 5 | Lasso | L +1C | -- | -- | 35-100 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4XUU |
A |
Unknot |
100.00% |
100.00% |
100.00% |
0.61 |
..Target: SRSHQELISQLLQSYXKLLLPDDEKFHGGWALIDCDPSLIDATHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEPTLFGKPKFSCXRLHYRYKEASGYFHTLRAVXRNPEEDGKDTLQCIAEXLQITKQAXGSDLPIIEKKLEAKASKPHEDII |
||||
Wed Nov 29 11:37:05 2017 JOB CREATED : db7a5fd6-650f-4a50-b93e-650229d0952b Wed Nov 29 11:38:02 2017 STATUS CHANGED : N -> R Wed Nov 29 11:38:02 2017 INFO : JOB STARTED AT: 2017-11-29 11:38:02.430119 Wed Nov 29 11:38:02 2017 INFO : METHOD: 1 Wed Nov 29 11:38:02 2017 INFO : Precalculated profile found... Wed Nov 29 11:38:02 2017 INFO : Homologue pool found... Wed Nov 29 11:38:02 2017 INFO : Verifying structure sequences of homologues... Wed Nov 29 11:38:12 2017 INFO : Starting homologue filtering... Wed Nov 29 11:38:15 2017 INFO : Getting structures from PDB... Wed Nov 29 11:38:18 2017 INFO : Creating modelling alignment... Wed Nov 29 11:38:18 2017 INFO : Modelling... Wed Nov 29 11:38:58 2017 INFO : Model 1 built Wed Nov 29 11:38:58 2017 INFO : Validating Calpha distances... Wed Nov 29 11:38:58 2017 INFO : Model 1 distances correct: True Wed Nov 29 11:38:58 2017 INFO : Modelling... Wed Nov 29 11:39:36 2017 INFO : Model 2 built Wed Nov 29 11:39:36 2017 INFO : Validating Calpha distances... Wed Nov 29 11:39:36 2017 INFO : Model 2 distances correct: True Wed Nov 29 11:39:36 2017 INFO : Modelling... Wed Nov 29 11:40:13 2017 INFO : Model 3 built Wed Nov 29 11:40:13 2017 INFO : Validating Calpha distances... Wed Nov 29 11:40:13 2017 INFO : Model 3 distances correct: True Wed Nov 29 11:40:13 2017 INFO : Modelling... Wed Nov 29 11:40:51 2017 INFO : Model 4 built Wed Nov 29 11:40:51 2017 INFO : Validating Calpha distances... Wed Nov 29 11:40:51 2017 INFO : Model 4 distances correct: True Wed Nov 29 11:40:51 2017 INFO : Modelling... Wed Nov 29 11:41:28 2017 INFO : Model 5 built Wed Nov 29 11:41:28 2017 INFO : Validating Calpha distances... Wed Nov 29 11:41:28 2017 INFO : Model 5 distances correct: True Wed Nov 29 11:41:37 2017 INFO : Finished modelling Wed Nov 29 11:41:37 2017 STATUS CHANGED : R -> P Wed Nov 29 11:41:37 2017 INFO : Checking topology... Wed Nov 29 11:41:53 2017 INFO : Knot matrices done... Wed Nov 29 11:41:53 2017 INFO : No knots found... Wed Nov 29 11:41:54 2017 INFO : Some lassos found! Wed Nov 29 11:41:54 2017 INFO : Finishing... Wed Nov 29 11:41:54 2017 STATUS CHANGED : P -> E Wed Nov 29 11:41:54 2017 ERROR : Error while finishing Wed Nov 29 11:41:54 2017 STATUS CHANGED : E -> F |
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