| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1CAU |
B |
Unknot |
98.91% |
128.57% |
128.57% |
0.73 |
..Target: NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQ-- |
||||
1UIK |
A |
Unknot |
61.26% |
125.00% |
76.19% |
0.88 |
..Target: NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESM--QLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQ |
||||
Sun Jul 23 14:55:33 2017 JOB CREATED : e25e5cdd-3d51-4b5a-b95c-13aceae93cba Sun Jul 23 16:18:02 2017 STATUS CHANGED : N -> R Sun Jul 23 16:18:02 2017 INFO : JOB STARTED AT: 2017-07-23 16:18:02.213595 Sun Jul 23 16:18:02 2017 INFO : METHOD: 1 Sun Jul 23 16:18:02 2017 INFO : Precalculated profile found... Sun Jul 23 16:18:02 2017 INFO : Homologue pool found... Sun Jul 23 16:18:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 16:22:15 2017 INFO : Starting homologue filtering... Sun Jul 23 16:22:57 2017 INFO : Getting structures from PDB... Sun Jul 23 16:23:03 2017 INFO : Creating modelling alignment... Sun Jul 23 16:23:03 2017 INFO : Modelling... Sun Jul 23 16:28:03 2017 INFO : Model 1 built Sun Jul 23 16:28:03 2017 INFO : Validating Calpha distances... Sun Jul 23 16:28:03 2017 INFO : Model 1 distances correct: True Sun Jul 23 16:28:03 2017 INFO : Modelling... Sun Jul 23 16:32:54 2017 INFO : Model 2 built Sun Jul 23 16:32:54 2017 INFO : Validating Calpha distances... Sun Jul 23 16:32:54 2017 INFO : Model 2 distances correct: True Sun Jul 23 16:32:54 2017 INFO : Modelling... Sun Jul 23 16:37:56 2017 INFO : Model 3 built Sun Jul 23 16:37:56 2017 INFO : Validating Calpha distances... Sun Jul 23 16:37:56 2017 INFO : Model 3 distances correct: True Sun Jul 23 16:37:56 2017 INFO : Modelling... Sun Jul 23 16:42:44 2017 INFO : Model 4 built Sun Jul 23 16:42:44 2017 INFO : Validating Calpha distances... Sun Jul 23 16:42:44 2017 INFO : Model 4 distances correct: True Sun Jul 23 16:42:44 2017 INFO : Modelling... Sun Jul 23 16:47:49 2017 INFO : Model 5 built Sun Jul 23 16:47:49 2017 INFO : Validating Calpha distances... Sun Jul 23 16:47:49 2017 INFO : Model 5 distances correct: True Sun Jul 23 16:48:16 2017 INFO : Finished modelling Sun Jul 23 16:48:16 2017 STATUS CHANGED : R -> P Sun Jul 23 16:48:16 2017 INFO : Checking topology... Sun Jul 23 16:55:49 2017 INFO : Knot matrices done... Sun Jul 23 16:55:49 2017 INFO : No knots found... Sun Jul 23 16:55:49 2017 INFO : No lassos found... Sun Jul 23 16:55:49 2017 INFO : Finishing... Sun Jul 23 16:55:49 2017 INFO : Job done Sun Jul 23 16:55:49 2017 STATUS CHANGED : P -> F Sun Jul 23 16:55:49 2017 STATUS CHANGED : F -> F |
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