| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 41 | 28-270 | -- | -- | -- | |||
| Model 2 | Knot | K 41 | 28-296 | -- | -- | -- | |||
| Model 3 | Knot | K 41 | 28-270 | -- | -- | -- | |||
| Model 4 | Knot | K 41 | 28-297 | -- | -- | -- | |||
| Model 5 | Knot | K 41 | 28-294 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5MG0 |
A |
Unknown |
95.96% |
100.00% |
100.00% |
0.75 |
..Target: ---PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMSALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRELSEQVQVKEA----LE |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:51:46 2017 JOB CREATED : e3041a49-7008-4302-969f-df1f5be29c43 Sat Dec 2 05:26:02 2017 STATUS CHANGED : N -> R Sat Dec 2 05:26:02 2017 INFO : JOB STARTED AT: 2017-12-02 05:26:02.326266 Sat Dec 2 05:26:02 2017 INFO : METHOD: 1 Sat Dec 2 05:26:02 2017 INFO : Building Profile... Sat Dec 2 05:26:02 2017 INFO : --E-value set to 0.001-- Sat Dec 2 05:44:47 2017 INFO : Homologue pool found... Sat Dec 2 05:44:47 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 05:51:27 2017 INFO : Starting homologue filtering... Sat Dec 2 05:52:31 2017 INFO : Getting structures from PDB... Sat Dec 2 05:52:36 2017 INFO : Creating modelling alignment... Sat Dec 2 05:52:36 2017 INFO : Modelling... Sat Dec 2 05:55:12 2017 INFO : Model 1 built Sat Dec 2 05:55:12 2017 INFO : Validating Calpha distances... Sat Dec 2 05:55:12 2017 INFO : Model 1 distances correct: True Sat Dec 2 05:55:12 2017 INFO : Modelling... Sat Dec 2 05:57:50 2017 INFO : Model 2 built Sat Dec 2 05:57:50 2017 INFO : Validating Calpha distances... Sat Dec 2 05:57:50 2017 INFO : Model 2 distances correct: True Sat Dec 2 05:57:50 2017 INFO : Modelling... Sat Dec 2 06:00:28 2017 INFO : Model 3 built Sat Dec 2 06:00:28 2017 INFO : Validating Calpha distances... Sat Dec 2 06:00:28 2017 INFO : Model 3 distances correct: True Sat Dec 2 06:00:28 2017 INFO : Modelling... Sat Dec 2 06:02:35 2017 INFO : Model 4 built Sat Dec 2 06:02:35 2017 INFO : Validating Calpha distances... Sat Dec 2 06:02:35 2017 INFO : Model 4 distances correct: True Sat Dec 2 06:02:35 2017 INFO : Modelling... Sat Dec 2 06:04:48 2017 INFO : Model 5 built Sat Dec 2 06:04:48 2017 INFO : Validating Calpha distances... Sat Dec 2 06:04:48 2017 INFO : Model 5 distances correct: True Sat Dec 2 06:05:23 2017 INFO : Finished modelling Sat Dec 2 06:05:23 2017 STATUS CHANGED : R -> P Sat Dec 2 06:05:23 2017 INFO : Checking topology... Sat Dec 2 06:08:58 2017 INFO : Knot matrices done... Sat Dec 2 06:10:18 2017 INFO : Some knots found! Sat Dec 2 06:10:18 2017 INFO : No lassos found... Sat Dec 2 06:10:18 2017 INFO : Finishing... Sat Dec 2 06:10:18 2017 STATUS CHANGED : P -> E Sat Dec 2 06:10:18 2017 ERROR : Error while finishing Sat Dec 2 06:10:18 2017 STATUS CHANGED : E -> F |
GapRepairer