| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K -5231 | 4-219 | -- | -- | -- | |||
| Model 2 | Knot | K -5231 | 4-219 | -- | -- | -- | |||
| Model 3 | Knot | K -5231 | 4-219 | -- | -- | -- | |||
| Model 4 | Knot | K -5231 | 4-219 | -- | -- | -- | |||
| Model 5 | Knot | K -5231 | 6-219 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1CMX |
A |
K -31 |
33.18% |
128.57% |
56.35% |
1.21 |
..Target: EWCL-XESDPGVFTELIKGFGCRGAQVE-EIWSL-EPENFEKL-KPVHGLIFLFKWQPGEEP--AGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAXKGLALSNSDVIR-QVHNSFARQQXFEFDT-KTSAKEEDA---FHFVSYVPVNGRLYELDGLR-EGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLXAIVSDRKXIYEQKIAELQRQLAEEPXDTDQGNSXLSAIQSEVAKNQXLIEEEVQKLKRYKIENIRRKHNYLPFIXELLKTLAEHQQLIPL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Jul 20 21:47:09 2017 JOB CREATED : e372b9d5-2ba8-409f-906a-d097695abf7e Thu Jul 20 21:48:01 2017 STATUS CHANGED : N -> R Thu Jul 20 21:48:01 2017 INFO : JOB STARTED AT: 2017-07-20 21:48:01.968868 Thu Jul 20 21:48:01 2017 INFO : METHOD: 1 Thu Jul 20 21:48:02 2017 INFO : Precalculated profile found... Thu Jul 20 21:48:02 2017 INFO : Homologue pool found... Thu Jul 20 21:48:02 2017 INFO : Verifying structure sequences of homologues... Thu Jul 20 21:48:45 2017 INFO : Starting homologue filtering... Thu Jul 20 21:49:16 2017 INFO : Getting structures from PDB... Thu Jul 20 21:49:18 2017 INFO : Creating modelling alignment... Thu Jul 20 21:49:18 2017 INFO : Modelling... Thu Jul 20 21:49:18 2017 STATUS CHANGED : R -> E Thu Jul 20 21:49:18 2017 ERROR : Error while modelling Fri Jul 21 07:46:01 2017 STATUS CHANGED : N -> R Fri Jul 21 07:46:01 2017 INFO : JOB STARTED AT: 2017-07-21 07:46:01.719867 Fri Jul 21 07:46:01 2017 INFO : METHOD: 1 Fri Jul 21 07:46:01 2017 INFO : Precalculated profile found... Fri Jul 21 07:46:01 2017 INFO : Homologue pool found... Fri Jul 21 07:46:01 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 07:46:44 2017 INFO : Starting homologue filtering... Fri Jul 21 07:47:09 2017 INFO : Getting structures from PDB... Fri Jul 21 07:47:11 2017 INFO : Creating modelling alignment... Fri Jul 21 07:47:11 2017 INFO : Modelling... Fri Jul 21 07:47:12 2017 STATUS CHANGED : R -> E Fri Jul 21 07:47:12 2017 ERROR : Error while modelling Fri Jul 21 07:56:02 2017 STATUS CHANGED : N -> R Fri Jul 21 07:56:02 2017 INFO : JOB STARTED AT: 2017-07-21 07:56:02.112724 Fri Jul 21 07:56:02 2017 INFO : METHOD: 1 Fri Jul 21 07:56:02 2017 INFO : Precalculated profile found... Fri Jul 21 07:56:02 2017 INFO : Homologue pool found... Fri Jul 21 07:56:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 07:56:44 2017 INFO : Starting homologue filtering... Fri Jul 21 07:57:16 2017 INFO : Getting structures from PDB... Fri Jul 21 07:57:18 2017 INFO : Creating modelling alignment... Fri Jul 21 07:57:18 2017 INFO : Modelling... Fri Jul 21 07:57:19 2017 STATUS CHANGED : R -> E Fri Jul 21 07:57:19 2017 ERROR : Error while modelling Fri Jul 21 08:27:02 2017 STATUS CHANGED : N -> R Fri Jul 21 08:27:02 2017 INFO : JOB STARTED AT: 2017-07-21 08:27:02.209746 Fri Jul 21 08:27:02 2017 INFO : METHOD: 1 Fri Jul 21 08:27:02 2017 INFO : Precalculated profile found... Fri Jul 21 08:27:02 2017 INFO : Homologue pool found... Fri Jul 21 08:27:02 2017 INFO : Verifying structure sequences of homologues... Fri Jul 21 08:27:44 2017 INFO : Starting homologue filtering... Fri Jul 21 08:28:14 2017 INFO : Getting structures from PDB... Fri Jul 21 08:28:16 2017 INFO : Creating modelling alignment... Fri Jul 21 08:28:16 2017 INFO : Modelling... Fri Jul 21 08:34:33 2017 INFO : Model 1 built Fri Jul 21 08:34:33 2017 INFO : Validating Calpha distances... Fri Jul 21 08:34:33 2017 INFO : Model 1 distances correct: True Fri Jul 21 08:34:33 2017 INFO : Modelling... Fri Jul 21 08:36:59 2017 INFO : Model 2 built Fri Jul 21 08:36:59 2017 INFO : Validating Calpha distances... Fri Jul 21 08:36:59 2017 INFO : Model 2 distances correct: True Fri Jul 21 08:36:59 2017 INFO : Modelling... Fri Jul 21 08:41:09 2017 INFO : Model 3 built Fri Jul 21 08:41:09 2017 INFO : Validating Calpha distances... Fri Jul 21 08:41:09 2017 INFO : Model 3 distances correct: True Fri Jul 21 08:41:09 2017 INFO : Modelling... Fri Jul 21 08:45:13 2017 INFO : Model 4 built Fri Jul 21 08:45:13 2017 INFO : Validating Calpha distances... Fri Jul 21 08:45:13 2017 INFO : Model 4 distances correct: True Fri Jul 21 08:45:13 2017 INFO : Modelling... Fri Jul 21 08:47:40 2017 INFO : Model 5 built Fri Jul 21 08:47:40 2017 INFO : Validating Calpha distances... Fri Jul 21 08:47:40 2017 INFO : Model 5 distances correct: True Fri Jul 21 08:47:58 2017 INFO : Finished modelling Fri Jul 21 08:47:58 2017 STATUS CHANGED : R -> P Fri Jul 21 08:47:58 2017 INFO : Checking topology... Fri Jul 21 08:56:38 2017 INFO : Knot matrices done... Fri Jul 21 08:58:14 2017 INFO : Some knots found! Fri Jul 21 08:58:14 2017 INFO : No lassos found... Fri Jul 21 08:58:14 2017 INFO : Finishing... Fri Jul 21 08:58:14 2017 INFO : Job done Fri Jul 21 08:58:14 2017 STATUS CHANGED : P -> F Fri Jul 21 08:58:14 2017 STATUS CHANGED : F -> F |
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