| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 10-348 | 348-360 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 176-226 | 226-411 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2ZKT |
B |
S +31 |
100.00% |
278.38% |
278.38% |
0.70 |
..Target: MVLKRKGLLIILDGLGDRPIKELNGLTPLEYANTPNMDKLAEIGILGQQDPIKPGQPAGSDTAHLSIFGYDPYETYRGRGFFEALGVGLDLSKDDLAFRVNFATLENGIITDRRAGRISTEEAHELARAIQEEVDIGVDFIFKGATGHRAVLVLKGMSRGYKVGDNDPHEAGKPPLKFSYEDEDSKKVAEILEEFVKKAQEVLEKHPINERRRKEGKPIANYLLIRGAGTYPNIPMKFTEQWKVKAAGVIAVALVKGVARAVGFDVYTPEGATGEYNTNEMAKAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKAELIERADRMIGYILDHVDLEEVVIAITGDHSTPCEVMNHSGDPVPLLIAGGGVRTDDTKRFGEREAMKGGLGRIRGHDIVPIMMDLMNRSEKFGA |
||||
3IDD |
A |
S +31 |
43.13% |
393.33% |
136.67% |
1.31 |
..Target: MVLKRKGLLIILDGLGDRPIKELNGLTPLEYANTPNMDKLAEIGILGQQDPIKPGQPAGSDTAHLSIFGYDPYETYRGRGFFEALGVGLDLSKDDLAFRVNFATLENGIITDRRAGRISTEEAHELARAIQEEVDIG-VDFIFKGATGHRAVLVLKGMSRGYKVGDNDPHEAGKPPLKFSYEDEDSKKVAEILEEFVKKAQEVLEKHPINERRRKEGKPIANYLLIRGAGTYPNIPMKFTEQWKVKAAGVIAVALVKGVARAVGFDVYTPEGATGEYNTNEMAKAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKAELIERADRMIGYILDHVDLEEVVIAITGDHSTPCEVMNHSGDPVPLLIAGGGVRTDDTKRFGEREAMKGGLGRIRGHDIVPIMMDLMNRSEKFGA |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | DNDPHEAGKPPLKFSYEDEDSKKVAEILEEFVKKAQEVLEKHPINERRRKEGKPIANYLLIRG |
|||
|---|---|---|---|---|---|---|---|---|---|
| 2ZKT | B | S +31 | 84.21% | 84.21% | DNDPHEAGKPP---------SKKVAEILEEFVKKAQEVLEKHPINERRRKEGKPIANYLLIRG |
||||
| 3IDD | A | S +31 | 33.33% | 100.00% | DSDPHREGLPPEKIRPTDPSGDRTAEVXNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRS |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 |
Fri Dec 1 09:47:11 2017 JOB CREATED : ee29440a-64ea-4660-8c09-739da96c3113 Fri Dec 1 23:38:02 2017 STATUS CHANGED : N -> R Fri Dec 1 23:38:02 2017 INFO : JOB STARTED AT: 2017-12-01 23:38:02.129586 Fri Dec 1 23:38:02 2017 INFO : METHOD: 1 Fri Dec 1 23:38:02 2017 INFO : Precalculated profile found... Fri Dec 1 23:38:02 2017 INFO : Homologue pool found... Fri Dec 1 23:38:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 23:38:10 2017 INFO : Starting homologue filtering... Fri Dec 1 23:38:20 2017 INFO : Getting structures from PDB... Fri Dec 1 23:38:30 2017 INFO : Creating modelling alignment... Fri Dec 1 23:38:30 2017 INFO : Modelling... Sat Dec 2 00:14:41 2017 INFO : Model 1 built Sat Dec 2 00:14:41 2017 INFO : 2/4 gaps will be remodelled Sat Dec 2 02:17:39 2017 INFO : Validating Calpha distances... Sat Dec 2 02:17:39 2017 INFO : Model 1 distances correct: False Sat Dec 2 02:17:39 2017 INFO : Modelling... Sat Dec 2 03:30:43 2017 INFO : Model 2 built Sat Dec 2 03:30:43 2017 INFO : 2/4 gaps will be remodelled Sat Dec 2 04:58:16 2017 INFO : Validating Calpha distances... Sat Dec 2 04:58:16 2017 INFO : Model 2 distances correct: False Sat Dec 2 04:58:16 2017 INFO : Modelling... Sat Dec 2 05:33:06 2017 INFO : Model 3 built Sat Dec 2 05:33:06 2017 INFO : 2/4 gaps will be remodelled Sat Dec 2 06:41:26 2017 INFO : Validating Calpha distances... Sat Dec 2 06:41:26 2017 INFO : Model 3 distances correct: True Sat Dec 2 06:41:26 2017 INFO : Modelling... Sat Dec 2 07:30:00 2017 INFO : Model 4 built Sat Dec 2 07:30:00 2017 INFO : 1/4 gaps will be remodelled Sat Dec 2 07:49:12 2017 INFO : Validating Calpha distances... Sat Dec 2 07:49:12 2017 INFO : Model 4 distances correct: False Sat Dec 2 07:49:12 2017 INFO : Modelling... Sat Dec 2 08:09:54 2017 INFO : Model 5 built Sat Dec 2 08:09:54 2017 INFO : 1/4 gaps will be remodelled Sat Dec 2 08:26:49 2017 INFO : Validating Calpha distances... Sat Dec 2 08:26:49 2017 INFO : Model 5 distances correct: True Sat Dec 2 08:27:02 2017 INFO : Finished modelling Sat Dec 2 08:27:02 2017 STATUS CHANGED : R -> P Sat Dec 2 08:27:02 2017 INFO : Checking topology... Sat Dec 2 08:30:55 2017 INFO : Knot matrices done... Sat Dec 2 08:31:19 2017 INFO : Some knots found! Sat Dec 2 08:31:19 2017 INFO : No lassos found... Sat Dec 2 08:31:19 2017 INFO : Finishing... Sat Dec 2 08:31:19 2017 STATUS CHANGED : P -> E Sat Dec 2 08:31:19 2017 ERROR : Error while finishing Sat Dec 2 08:31:19 2017 STATUS CHANGED : E -> F |
GapRepairer