| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 2 | Lasso | L -1N | -- | -- | 430-573 | -48 | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3NYX |
A |
Unknot |
99.30% |
205.56% |
205.56% |
0.97 |
..Target: LSFHRVDQKEITQLSHLGQGTRTNVYEGRLRVEGSGDPEEGKMDDEDPLVPGRDRGQELRVVLKVLDPSHHDIALAFYETASLMSQVSHTHLAFVHGVCVRGPENIMVTEYVEHGPLDVWLRRERGHVPMAWKMVVAQQLASALSYLENKNLVHGNVCGRNILLARLGLAEGTSPFIKLSDPGVGLGALSREERVERIPWLAPECLPGGANSLSTAMDKWGFGATLLEICFDGEAPLQSRSPSEKEHFYQRQHRLPEPSCPQLATLTSQCLTYEPTQRPSFRTILRDLTRLQPHNLADVLTVNPDSPASDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ- |
||||
Thu Nov 21 14:17:22 2019 JOB CREATED : f087da68-f9fc-417d-9fa6-5eb8b26ce233 Thu Nov 21 14:18:02 2019 STATUS CHANGED : N -> R Thu Nov 21 14:18:02 2019 INFO : JOB STARTED AT: 2019-11-21 14:18:02.424558 Thu Nov 21 14:18:02 2019 INFO : METHOD: 1 Thu Nov 21 14:18:02 2019 INFO : Building Profile... Thu Nov 21 14:18:02 2019 INFO : --E-value set to 0.001-- Thu Nov 21 14:50:37 2019 INFO : Homologue pool found... Thu Nov 21 14:50:37 2019 INFO : Verifying structure sequences of homologues... Thu Nov 21 18:00:58 2019 INFO : Starting homologue filtering... Thu Nov 21 18:01:27 2019 INFO : Getting structures from PDB... Thu Nov 21 18:01:30 2019 INFO : Creating modelling alignment... Thu Nov 21 18:01:30 2019 INFO : Modelling... Thu Nov 21 18:24:38 2019 INFO : Model 1 built Thu Nov 21 18:24:38 2019 INFO : 1/5 gaps will be remodelled Thu Nov 21 18:54:43 2019 INFO : Validating Calpha distances... Thu Nov 21 18:54:43 2019 INFO : Model 1 distances correct: True Thu Nov 21 18:54:43 2019 INFO : Modelling... Thu Nov 21 19:14:48 2019 INFO : Model 2 built Thu Nov 21 19:14:48 2019 INFO : 1/5 gaps will be remodelled Thu Nov 21 19:45:50 2019 INFO : Validating Calpha distances... Thu Nov 21 19:45:50 2019 INFO : Model 2 distances correct: True Thu Nov 21 19:45:50 2019 INFO : Modelling... Thu Nov 21 20:08:10 2019 INFO : Model 3 built Thu Nov 21 20:08:10 2019 INFO : 1/5 gaps will be remodelled Thu Nov 21 20:38:26 2019 INFO : Validating Calpha distances... Thu Nov 21 20:38:26 2019 INFO : Model 3 distances correct: True Thu Nov 21 20:38:26 2019 INFO : Modelling... Thu Nov 21 21:03:27 2019 INFO : Model 4 built Thu Nov 21 21:03:27 2019 INFO : Validating Calpha distances... Thu Nov 21 21:03:27 2019 INFO : Model 4 distances correct: True Thu Nov 21 21:03:27 2019 INFO : Modelling... Thu Nov 21 21:26:16 2019 INFO : Model 5 built Thu Nov 21 21:26:16 2019 INFO : 1/5 gaps will be remodelled Thu Nov 21 21:57:01 2019 INFO : Validating Calpha distances... Thu Nov 21 21:57:01 2019 INFO : Model 5 distances correct: True Thu Nov 21 21:57:45 2019 INFO : Finished modelling Thu Nov 21 21:57:45 2019 STATUS CHANGED : R -> P Thu Nov 21 21:58:05 2019 INFO : Finished edm surfaces: success Thu Nov 21 21:58:05 2019 INFO : Checking topology... Thu Nov 21 21:58:06 2019 INFO : Knot matrices done... Thu Nov 21 21:58:06 2019 INFO : No knots found... Thu Nov 21 21:58:08 2019 INFO : Some lassos found! Thu Nov 21 21:58:08 2019 INFO : Finishing... Thu Nov 21 21:58:08 2019 INFO : Job done Thu Nov 21 21:58:08 2019 STATUS CHANGED : P -> F Thu Nov 21 21:58:08 2019 STATUS CHANGED : F -> F |
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