| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 28-240 | 240-247 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +33 | ||||
| Model 2 | Slipknot | S 31 | 28-239 | 239-248 | -- | -- | |||
| Lasso | LL +1,+2 | -- | -- | 44-160 | +33 | ||||
| Model 3 | Slipknot | S +31 | 28-240 | 240-247 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +34 | ||||
| Model 4 | Slipknot | S +31 | 28-239 | 239-248 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +34 | ||||
| Model 5 | Slipknot | S +31 | 28-237 | 237-248 | -- | -- | |||
| Lasso | L +1N | -- | -- | 44-160 | +34 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5C69 |
A |
Unknown |
99.55% |
53.85% |
53.85% |
0.90 |
..Target: QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATNNRARRFLGFLLGVGSAIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sun Jul 23 14:58:19 2017 JOB CREATED : f5613c11-014d-4d02-94d3-48dbf08fc959 Sun Jul 23 20:12:02 2017 STATUS CHANGED : N -> R Sun Jul 23 20:12:02 2017 INFO : JOB STARTED AT: 2017-07-23 20:12:02.448872 Sun Jul 23 20:12:02 2017 INFO : METHOD: 1 Sun Jul 23 20:12:02 2017 INFO : Precalculated profile found... Sun Jul 23 20:12:02 2017 INFO : Homologue pool found... Sun Jul 23 20:12:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 20:15:45 2017 INFO : Starting homologue filtering... Sun Jul 23 20:16:33 2017 INFO : Getting structures from PDB... Sun Jul 23 20:16:42 2017 INFO : Creating modelling alignment... Sun Jul 23 20:16:42 2017 INFO : Modelling... Sun Jul 23 20:19:45 2017 INFO : Model 1 built Sun Jul 23 20:19:45 2017 INFO : Validating Calpha distances... Sun Jul 23 20:19:45 2017 INFO : Model 1 distances correct: True Sun Jul 23 20:19:45 2017 INFO : Modelling... Sun Jul 23 20:22:45 2017 INFO : Model 2 built Sun Jul 23 20:22:45 2017 INFO : Validating Calpha distances... Sun Jul 23 20:22:46 2017 INFO : Model 2 distances correct: True Sun Jul 23 20:22:46 2017 INFO : Modelling... Sun Jul 23 20:25:30 2017 INFO : Model 3 built Sun Jul 23 20:25:30 2017 INFO : Validating Calpha distances... Sun Jul 23 20:25:30 2017 INFO : Model 3 distances correct: True Sun Jul 23 20:25:30 2017 INFO : Modelling... Sun Jul 23 20:30:31 2017 INFO : Model 4 built Sun Jul 23 20:30:31 2017 INFO : Validating Calpha distances... Sun Jul 23 20:30:31 2017 INFO : Model 4 distances correct: True Sun Jul 23 20:30:31 2017 INFO : Modelling... Sun Jul 23 20:35:38 2017 INFO : Model 5 built Sun Jul 23 20:35:38 2017 INFO : Validating Calpha distances... Sun Jul 23 20:35:38 2017 INFO : Model 5 distances correct: True Sun Jul 23 20:36:17 2017 INFO : Finished modelling Sun Jul 23 20:36:17 2017 STATUS CHANGED : R -> P Sun Jul 23 20:36:17 2017 INFO : Checking topology... Sun Jul 23 20:54:49 2017 INFO : Knot matrices done... Sun Jul 23 20:56:54 2017 INFO : Some knots found! Sun Jul 23 20:57:40 2017 INFO : Some lassos found! Sun Jul 23 20:57:40 2017 INFO : Finishing... Sun Jul 23 20:57:41 2017 INFO : Job done Sun Jul 23 20:57:41 2017 STATUS CHANGED : P -> F Sun Jul 23 20:57:41 2017 STATUS CHANGED : F -> F |
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